PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os04g27410.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | MYB_related | ||||||||
Protein Properties | Length: 269aa MW: 28917.1 Da PI: 11.5783 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 31.5 | 4.1e-10 | 174 | 218 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ l++ + ++G+g+ ++I+r + Rt+ q+ s+ qky LOC_Os04g27410.1 174 PWTEEEHRLFLLGLDKFGKGDLHSISRNFVISRTPTQVASHAQKY 218 7*****************************99************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.072 | 167 | 223 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.1E-16 | 169 | 224 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.7E-8 | 171 | 221 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 2.4E-15 | 171 | 221 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 1.1E-7 | 172 | 217 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.9E-8 | 174 | 218 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.02E-7 | 174 | 219 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 269 aa Download sequence Send to blast |
MAEGADDGDG APGRSSPAVR VRGGARRPSE RGEELAGRPC AERSSHAVLA RGRSWSSPVI 60 GSSGGAVGVR VRGGARHLSA HGGGSGARRW SGAAAVGAGV RRPWATTTTT PPGRGREREI 120 RERGREEEEE KEREDDCPRL PVYTNAWRKS GGGGRYDGGK SCSKAEQERR KGIPWTEEEH 180 RLFLLGLDKF GKGDLHSISR NFVISRTPTQ VASHAQKYFI RLNSMNRDRR RSSIHDITSV 240 TAGDVAAQQG PITGQAKAAL RRRSGHRA* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.15338 | 1e-139 | leaf| panicle| root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 24850302 | 1e-139 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os04g27410.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os04g27410 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL606729 | 0.0 | AL606729.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0062B06, complete sequence. | |||
GenBank | AP014960 | 0.0 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012612 | 0.0 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. | |||
GenBank | CR855227 | 0.0 | CR855227.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0159H11-OSIGBa0137A07, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | Q01HU9 | 0.0 | Q01HU9_ORYSA; OSIGBa0159H11-OSIGBa0137A07.10 protein | ||||
STRING | ONIVA04G06580.1 | 2e-81 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9466 | 30 | 41 | Representative plant | OGRP275 | 17 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08520.1 | 4e-38 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os04g27410.1 |