PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os04g25870.1
Common NameLOC107275447, Os04g0324900, OsJ_14250, OSJNBa0054D14.7, OSNPB_040324900
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family M-type_MADS
Protein Properties Length: 210aa    MW: 23393.3 Da    PI: 10.2037
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os04g25870.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF23.57e-081438630
                      HHHHHHHHHHHHHHHHHHHHHHHHH CS
            SRF-TF  6 ksnrqvtfskRrngilKKAeELSvL 30
                      + +rqvtf kR+ng+ KK +E  +L
  LOC_Os04g25870.1 14 DVKRQVTFKKRLNGLTKKVSEFATL 38
                      689******************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006612.166138IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.16E-14181IPR002100Transcription factor, MADS-box
SMARTSM004320.0042152IPR002100Transcription factor, MADS-box
PRINTSPR004046.4E-6323IPR002100Transcription factor, MADS-box
PfamPF003191.1E-81438IPR002100Transcription factor, MADS-box
PRINTSPR004046.4E-62338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MALRKMKLQR IVIDVKRQVT FKKRLNGLTK KVSEFATLFL MVYGEVEVQA TKVWPLVWKA  60
TRVLEHFKAM PQLDRYKKMT DLEDILNEQV DKLKEELHKV GRDADESDTK LILVEALNGH  120
RPSLEGLTIE QITSLGLMAN AHLKIVNDRL KKLREQGLIP ASLLLSGTEV PIQREGWLMD  180
VARGIGSMGN NRFGGTSGSG IAGSNGDMA*
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ7XKL9
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os04g25870.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs04g25870
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6630220.0AL663022.4 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0054D14, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634792.11e-151agamous-like MADS-box protein AGL80
TrEMBLA0A0E0P7D61e-150A0A0E0P7D6_ORYRU; Uncharacterized protein
TrEMBLQ7XKL91e-150Q7XKL9_ORYSJ; OSJNBa0054D14.7 protein
STRINGORUFI04G08780.11e-151(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Representative plantOGRP11413173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.11e-16AGAMOUS-like 80