PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os04g25100.1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 779aa    MW: 89859.3 Da    PI: 8.2591
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os04g25100.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR178.11.7e-24120209190
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                       kfY +YAk  GFsvrk++ k++  +gei++r+fvCs+eg+re ++ + te+ r++ra tr+gC akl++++++ +g+w v++++++H+Hela
  LOC_Os04g25100.1 120 KFYLDYAKGKGFSVRKNNLKRK--DGEIIWRQFVCSCEGYRELKHFErTERIREPRALTRCGCLAKLEIERNEeKGVWFVKEFDNQHTHELA 209
                       6****************99887..9*****************999876788999******************99****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.7E-23120209IPR004330FAR1 DNA binding domain
PfamPF105512.6E-33331425IPR018289MULE transposase domain
PROSITE profilePS509668.716609646IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 779 aa     Download sequence    Send to blast
MVRKPTAGAL PEFDLRKENP CNTDQSEQNK NTDQGGLKAE LRRSISCLTN AGVDTVPQFL  60
PQPRRLARLR RRPYRIGSHL RFASQVRSDI MTSSYVSLED QEEYKMMGTV VFSSEEEGYK  120
FYLDYAKGKG FSVRKNNLKR KDGEIIWRQF VCSCEGYREL KHFERTERIR EPRALTRCGC  180
LAKLEIERNE EKGVWFVKEF DNQHTHELAN PDHVAFLGVH RVMSDSKKAQ AVELRMSGLR  240
PFQVMEVMEN NHDELDEVGF VMKDLYNFFT RYDMKNIKGH DAEDVLKYLT RKQEEDAEFF  300
FKYTTDEEGR LRNVFWADAE SRLDYAAFGG VVIFDSTYRV NKYNLPFIPF IGVNHHRSTT  360
IFGCGILSNE SVNSYCWLLE TFLEAMRQVH PKSLITDGDL AMAKAISKVM PGAYHRLCTW  420
HIEENMSRHL RKPKLDELRK LIYESMDEEE FERRWADFKE NGGTGNGQWI ALMYRLREKW  480
AAAYTDGKYL LGMRSNQRSE SLNSKLHTLL KRNMSLMCLV KHVKLCIQGL RKKEAQLDAK  540
STNSVPFCRI DADPLEKDAA RIYTAVVFKK VRAQIRLIAG LEVISGTNQD GSSLYVVGLK  600
DDNEVWDEVR VSFKGQALEG VECHCRKMEC EDIPCSHIFV VVKFLGFDTI PRCCVVDRWT  660
MGAKAAFRSD RNADPNVWSE HMVRYRSLRN LGSDAFFEAA RNPEQTEKAM DFLKGILDKG  720
SSSDENIVAG DFGPMPTHFS SSNQPLEKRV LDPEEIRAKG APSKRRRPFR ETLHTNNQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.801530.0root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2976024520.0
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os04g25100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs04g25100
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6065990.0AL606599.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0050F15, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611182.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLQ7XVP70.0Q7XVP7_ORYSJ; OSJNBa0050F15.2 protein
STRINGSi015784m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.18e-99FAR1-related sequence 5