PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os04g23550.2 | ||||||||
Common Name | LOC4335417, Os04g0301500, OSNPB_040301500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bHLH | ||||||||
Protein Properties | Length: 190aa MW: 20269.2 Da PI: 5.9395 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 13.7 | 0.00012 | 2 | 18 | 39 | 55 |
TCHHHHHHHHHHHHHHH CS HLH 39 sKaeiLekAveYIksLq 55 +Ka+i + A+eYI+ Lq LOC_Os04g23550.2 2 DKASIIKDAIEYIQRLQ 18 8***************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 4.45E-5 | 1 | 33 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.8E-7 | 1 | 34 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF55021 | 3.66E-5 | 110 | 170 | No hit | No description |
CDD | cd04873 | 0.00251 | 111 | 177 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009037 | anatomy | lemma | ||||
PO:0001047 | developmental stage | lemma development stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MDKASIIKDA IEYIQRLQAE EQQMLREVAA LESAAAASAA PAAANPFAGL GADEEHEYGH 60 HHPSSSSERT KKVKRALSVS SISDALLAAA APAPPVEIQE LRVSEVGDRV LVVSVTCSKR 120 RDAMARVCRA LEELRLRVIT ANITSVAGCL MHTLFVEVDH MDSVQMKQMV EAALSQLVAT 180 GSPLSSMSY* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.6043 | 0.0 | callus| leaf| panicle| seed| stem| vegetative meristem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 29466634 | 0.0 | ||||
Expression Atlas | Q0JEB7 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os04g23550.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os04g23550 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK242210 | 0.0 | AK242210.1 Oryza sativa Japonica Group cDNA, clone: J075170K16, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015634154.1 | 1e-133 | transcription factor bHLH35 | ||||
TrEMBL | A0A0E0P713 | 1e-131 | A0A0E0P713_ORYRU; Uncharacterized protein | ||||
TrEMBL | Q0JEB7 | 1e-131 | Q0JEB7_ORYSJ; Os04g0301500 protein | ||||
STRING | ORUFI04G07860.1 | 1e-132 | (Oryza rufipogon) | ||||
STRING | OS04T0301500-01 | 1e-132 | (Oryza sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57150.1 | 9e-28 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os04g23550.2 |
Entrez Gene | 4335417 |