PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os04g23440.1
Common NameOs04g0300600, OSJNBb0013O03.11
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 294aa    MW: 31323.7 Da    PI: 4.749
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os04g23440.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH413.5e-1398143555
                       HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       + ++Er RR+r+N++++ Lr ++Pk      +K++Ka+i++ A+ +I +Lq
  LOC_Os04g23440.1  98 NIAMERDRRKRLNEKLFALRAVVPKI-----TKMDKASIVRDAIAHIEKLQ 143
                       6789*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.19393142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.18E-1597162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.86E-1497147No hitNo description
PfamPF000106.9E-1198143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-1499148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-14100161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MEAAADMGVL LDLYWHTPHI FDLAVADSLL MDGFGGGMYG PAAAPATPAM VEKEYDESLS  60
ELYAYTSQSR YADSSSPDVV NLCSTAVASA AAAASSKNIA MERDRRKRLN EKLFALRAVV  120
PKITKMDKAS IVRDAIAHIE KLQEEERQLL DEISVLQSAA AVAATAVEDV DDSGVTMPSM  180
KKLRSTPPLD GGGGALRVAS SPPLQILEVE TKETEDFYGL ILQTSQSWPS DPQLQVSKVG  240
EKTVAVSIRC AKTRGAMAKV CHAVESLYLK VVSASVAAVD GTIVHTMFVE VTN*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.988900.0callus| stem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ7XKP5
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os04g23440.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs04g23440
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL7316211e-163AL731621.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0013O03, complete sequence.
GenBankAP0149601e-163AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633867.11e-164transcription factor bHLH35
TrEMBLQ7XKP50.0Q7XKP5_ORYSJ; OSJNBb0013O03.11 protein
STRINGORUFI04G07840.20.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104438133
Representative plantOGRP27531332
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.21e-35bHLH family protein