PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os04g22990.1 | ||||||||
Common Name | OSJNBa0041M21.10, OSJNBa0093P23.5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | FAR1 | ||||||||
Protein Properties | Length: 2075aa MW: 232080 Da PI: 8.6202 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 41.7 | 3.7e-13 | 30 | 106 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 kfYneYA+ GFs+r++k k+ ++ k+ e+++ ++r++ra t++gCka+l+++++ +g w v+ +e H+H la LOC_Os04g22990.1 30 KFYNEYARCKGFSIRRDKVKRF-----------SGYRTLKNFERTN---RKREPRALTHCGCKAMLEIELNGeTGMWFVSGFEARHSHRLA 106 6**************9986665...........4455555555543...4788******************99***************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.3E-10 | 30 | 106 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 2.7E-29 | 143 | 231 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.47 | 414 | 453 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 0.0039 | 428 | 455 | IPR006564 | Zinc finger, PMZ-type |
Pfam | PF03732 | 1.9E-17 | 1143 | 1233 | IPR005162 | Retrotransposon gag domain |
CDD | cd00303 | 5.98E-10 | 1470 | 1567 | No hit | No description |
SuperFamily | SSF56672 | 7.56E-111 | 1687 | 2048 | No hit | No description |
Gene3D | G3DSA:3.10.10.10 | 8.1E-23 | 1692 | 1837 | No hit | No description |
CDD | cd01647 | 4.59E-73 | 1727 | 1904 | No hit | No description |
Pfam | PF00078 | 9.1E-18 | 1744 | 1902 | IPR000477 | Reverse transcriptase domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 2075 aa Download sequence Send to blast |
MDEDEVSLEE MEEYNLVASK LFRSEEDGYK FYNEYARCKG FSIRRDKVKR FSGYRTLKNF 60 ERTNRKREPR ALTHCGCKAM LEIELNGETG MWFVSGFEAR HSHRLANPDL VAFLRSHREV 120 NDAQKAEAVE LGVGGLRTCQ IITYHVNRYS LPFVPFVGAN HHRSTIIFGC GILSNESVSS 180 YVWLLQTLLE AMHQKHPKSL ITDGDASMAK AITKVMPNTD HRLCSWHIEE NMKCHLRRQK 240 LADFKKFLYD AMDVDDFERC WVEYKAKYGF NENNLWISMM YELRKKWSTA YMKGTRFLGM 300 RSNQRSESLN SRLHRHLDRK MSLVDLVEHY EFCLSRIRRN EAVLDARASQ SVSFTTICAD 360 PLEKSAARIY MPAMFKKVWA EIRKLYEWEV FNVARQDGAG VFTVASKDNN VVQVHVWCTF 420 EEQSMNSANC DCKKLECDGI PCSHVCAVLK FLGVGTIPHC CVMTTQICSI HALYDLIATF 480 SVPQREAVHK CGFGGLLKIH RINVHRILCM WIANQFDTKA EAFKIQGSYL SLTNRDAEHL 540 LDLPSQGEEI FEPPQTKNRD LFDEFKTTSK QGAHIKLSLQ EYFQTNKGIH DDNFIHRFVL 600 FVIGVFLCPT TQRYVSSAYL NLVEDVNAIS AINWTSLNLN HLMKSIKNIS TIKGVNLEGN 660 LPLLRLWYWE KLRADNLDPT IDYTMRDKPL IQYWDKHKAK KRYKIDTTYD YAGADHGDSE 720 RNHSERMPPK RVVKEKVVRR KESDAGPDMA AEEGAEPSAS VAEDREAQAP SQPPSDPAPS 780 QPSSAPATSV QVPNTADVAK AAAAARALQT RAEILSTNQL VVPQAAPSQP TAPTALTVVQ 840 AQISLDPEAQ AEADIEAMRQ NMTRLQDMLR QMQEQQQAYE TTRRTKATSA PILQYSAGYA 900 PPQVQPQVVT QSSPPLAAQP PVYFAGQHQP PGQAPQSVAE GASALQAQLQ AFLQQLNQSH 960 YISSTTPSAH PVGNTSQGAP NWLPPIQPGS GPSPSSQGPQ FDFVNTVQVP TVQQQVPTPG 1020 FGTNQAPIQA AMMWSQPIFD PSMAAQQVQP VGAGQSNATA QLYAQAAISP FATPYPQQGA 1080 VNRAGGEKGL PLSGGIKTRP IPPQFKFPPV PRYSGETDPK EFLSIYESAI EAAHGDENTK 1140 AKVIHLALDG IARSWYFNLP ANSIYSWEQL RDVFVLNFRG TYEEPKTQQH LLGIRQRPGE 1200 SIRENMRRFS QARCQVQDIT EASVINAASA GLLEDELTRK IVNKEPQTLE HPLRIIDGFA 1260 RGEEDSKRRQ AIQAEYDKAS VAAAQAQAQV QIAEPPPLSV RQSQPAIQGQ PPRQGQAPMT 1320 WRKFRTDRAG KAVMAVEEVQ ALRKEFDTQQ ASNHQQPARK KVRKDLYCAF HGRSSHTTEQ 1380 CRNIRQRGNV QDPRPQQGTT VEAPREAVQE QTTPAKQRQD TQRRRKMQIR MVHSITSAGE 1440 GAPQYVNQLI SFGPEDAEGV LFPHQDPLVI SAEIAGFEVR RILVDGGSSA DVIYAEAYAK 1500 MGLPTQALTP ALTSLRGFSG EAVQVLGQAL LLIAFGSGEN RREEQILFDV VNIPYNYNAI 1560 FGRATLNKLE AISHHNYLKL KMPGPTGVIV VKGLQPSAAS KCDLAIINRA VHNVKTEPHE 1620 RPKHTPKPTP HGKVTKVQIN DADPTKLVSL GGDMGEEEVE SILEVLKKNI DIFAWSPDEV 1680 GGVPADLIMH HLAVKPNIKP RKQKLRKMSA DRQEATKTEV QKLLRAGVIQ EIDHPEWLAN 1740 PVLVRKSNGK WRMCVDFTDL NKACPKHDFP LPRIDQLVDL TAGCELMSFL DAYSGYHQIH 1800 MNPLDIPKTS FITPFGTFCH LRMPFGLRNA GATFARLVYK VLGKQLGRNV EAYVDDIVVK 1860 SRKAFDHAID LQETFDNLCV AGIKLNPEKC VFSVRVGKLL GFLVSETGIE ANPEKIDAIQ 1920 QMKPPSSIHE VQKLAGRIAA LSRFLSKAVE RGLPFFKTLR DARKFNWTPE CQAAFDELKQ 1980 HLQSPPVLIS PPRGSELLLY LAASPVAVSA ALVQKTESRQ KSVYFVSEAL QGAQTRYIEM 2040 EKLAYALSRP EFLSKIPNAY MCVNPRPGIS RGTQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ol8_A | 1e-41 | 1677 | 2037 | 43 | 397 | Reverse transcriptase/ribonuclease H |
4ol8_B | 1e-41 | 1677 | 2037 | 43 | 397 | Reverse transcriptase/ribonuclease H |
4ol8_E | 1e-41 | 1677 | 2037 | 43 | 397 | Reverse transcriptase/ribonuclease H |
4ol8_F | 1e-41 | 1677 | 2037 | 43 | 397 | Reverse transcriptase/ribonuclease H |
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Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 1421 | 1426 | QRRRKM |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q7X8F3 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os04g22990.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os04g22990 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL731595 | 0.0 | AL731595.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0041M21, complete sequence. | |||
GenBank | AL731622 | 0.0 | AL731622.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0093P23, complete sequence. | |||
GenBank | AP014960 | 0.0 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | Q7X8F3 | 0.0 | Q7X8F3_ORYSJ; OSJNBa0041M21.10 protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP30 | 12 | 351 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-45 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os04g22990.1 |