PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os04g21950.1
Common NameLOC4335388, Os04g0287400, OSNPB_040287400
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 327aa    MW: 34304.8 Da    PI: 10.33
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os04g21950.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.44.5e-31247305259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                        D ++WrKYGqK++kgs+fpr+YY+C++  gCp++k+ver+ +dp+++++tYegeH+h+
  LOC_Os04g21950.1 247 ADDFSWRKYGQKPIKGSPFPRGYYKCSTLrGCPARKHVERDPTDPSMLIVTYEGEHRHS 305
                       699***********************9988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.3E-20195244IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.803.8E-32234305IPR003657WRKY domain
PROSITE profilePS5081129.861241307IPR003657WRKY domain
SuperFamilySSF1182906.8E-26244306IPR003657WRKY domain
SMARTSM007744.9E-37246306IPR003657WRKY domain
PfamPF031064.4E-26248304IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:1990841Molecular Functionpromoter-specific chromatin binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020104anatomyleaf sheath
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MITMDLMGGY GRVDEQVAIQ EAAAAGLRGM EHLILQLSQT GTSERSPAPA QEQQQQVDCR  60
EITDMTVSKF KKVISMLNRT GHARFRRGPV VAQSSGPAAS EPAPVRSSPS AVSRPMTLDF  120
TKAASGYGKD AGFSVSGISA ASSSFLSSVT GDGSVSNGRG GGSSSLMLPP PPATSCGKPP  180
LSSAAAAMSA GAGHKRKCHD HAHSENVAGG KYGSTGGRCH CSKRRKHRVK RTIRVPAISS  240
KVADIPADDF SWRKYGQKPI KGSPFPRGYY KCSTLRGCPA RKHVERDPTD PSMLIVTYEG  300
EHRHSPSAAG QDHPPAPPPP LALPLA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-20234304271WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.496560.0callus| flower| leaf| panicle| root
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ0JEE2
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in aleurone cells. In seeds, predominantly present in the plumule, radicle and scutellum of the embryo. {ECO:0000269|PubMed:16623886}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts, when in complex with WRKY71, specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Represses specifically gibberellic acid (GA)-induced promoters in aleurone cells, probably by interfering with GAM1. {ECO:0000269|PubMed:16623886}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00464DAPTransfer from AT4G31550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os04g21950.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells (PubMed:15618416, PubMed:16623886). Accumulates in response to uniconazole, a gibberellic acid (GA) biosynthesis inhibitor (PubMed:16623886). Repressed by GA (PubMed:15618416). {ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:16623886}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs04g21950
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1009540.0AK100954.1 Oryza sativa Japonica Group cDNA clone:J023139N16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633572.10.0WRKY transcription factor WRKY51
SwissprotQ0JEE20.0WRK51_ORYSJ; WRKY transcription factor WRKY51
TrEMBLA0A0E0BNP90.0A0A0E0BNP9_9ORYZ; Uncharacterized protein
STRINGOS04T0287400-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61738171
Representative plantOGRP35571127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31550.17e-91WRKY DNA-binding protein 11
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang Y,Wang L
    The WRKY transcription factor superfamily: its origin in eukaryotes and expansion in plants.
    BMC Evol. Biol., 2005. 5: p. 1
    [PMID:15629062]
  3. Wu KL,Guo ZJ,Wang HH,Li J
    The WRKY family of transcription factors in rice and Arabidopsis and their origins.
    DNA Res., 2005. 12(1): p. 9-26
    [PMID:16106749]
  4. Xie Z, et al.
    Interactions of two abscisic-acid induced WRKY genes in repressing gibberellin signaling in aleurone cells.
    Plant J., 2006. 46(2): p. 231-42
    [PMID:16623886]
  5. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]
  6. Zhang ZL, et al.
    A negative regulator encoded by a rice WRKY gene represses both abscisic acid and gibberellins signaling in aleurone cells.
    Plant Mol. Biol., 2009. 70(1-2): p. 139-51
    [PMID:19199048]
  7. Hwang SH, et al.
    OsWRKY51, a rice transcription factor, functions as a positive regulator in defense response against Xanthomonas oryzae pv. oryzae.
    Plant Cell Rep., 2016. 35(9): p. 1975-85
    [PMID:27300023]