PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os04g18650.1 | ||||||||
Common Name | B1234D02.6, LOC4335322, Os04g0257500, OSNPB_040257500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | ERF | ||||||||
Protein Properties | Length: 129aa MW: 14193.6 Da PI: 5.957 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 67.7 | 2.2e-21 | 10 | 61 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GVr+++ +g+++AeIrdp + r++lg+f+taeeAa+a+++a+ +++g LOC_Os04g18650.1 10 SKYRGVRRRP-WGKFAAEIRDPERG--GSRVWLGTFDTAEEAARAYDRAAFAMKG 61 89********.**********8333..4************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.79E-31 | 10 | 69 | No hit | No description |
Pfam | PF00847 | 1.1E-15 | 10 | 61 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.6E-24 | 10 | 69 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 24.513 | 11 | 69 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.6E-36 | 11 | 75 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.7E-32 | 11 | 69 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-12 | 12 | 23 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-12 | 35 | 51 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020039 | anatomy | leaf lamina |
Sequence ? help Back to Top |
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Protein Sequence Length: 129 aa Download sequence Send to blast |
MEDDKKEAAS KYRGVRRRPW GKFAAEIRDP ERGGSRVWLG TFDTAEEAAR AYDRAAFAMK 60 GAMAVLNFPG RTSSTGSSSS SSSTPPAPVT TSRHCADTTE KVELVYLDDK VLDELLAEDY 120 SYRNNNNY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-29 | 10 | 111 | 13 | 114 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32992954 | 0.0 | ||||
Expression Atlas | Q6MWK9 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os04g18650.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os04g18650 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK107745 | 0.0 | AK107745.1 Oryza sativa Japonica Group cDNA clone:002-132-H03, full insert sequence. | |||
GenBank | AP014960 | 0.0 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. | |||
GenBank | BX842602 | 0.0 | BX842602.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: B1234D02, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015635372.1 | 2e-90 | ethylene-responsive transcription factor ERF098 | ||||
Swissprot | Q9LTC5 | 2e-34 | ERF98_ARATH; Ethylene-responsive transcription factor ERF098 | ||||
TrEMBL | A0A0E0P6G8 | 5e-89 | A0A0E0P6G8_ORYRU; Uncharacterized protein | ||||
TrEMBL | Q6MWK9 | 5e-89 | Q6MWK9_ORYSJ; B1234D02.6 protein | ||||
STRING | ORUFI04G06330.1 | 8e-90 | (Oryza rufipogon) | ||||
STRING | OS04T0257500-01 | 8e-90 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP103 | 37 | 465 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G04370.1 | 3e-23 | Ethylene-responsive element binding factor 14 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os04g18650.1 |
Entrez Gene | 4335322 |
Publications ? help Back to Top | |||
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