PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os04g11830.1 | ||||||||
Common Name | Os04g0194600, OSJNBa0040D17.14, OSJNBb0026E15.1, PCF1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | TCP | ||||||||
Protein Properties | Length: 185aa MW: 18905.2 Da PI: 6.9728 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 107 | 3e-33 | 52 | 127 | 3 | 74 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec....e 74 k ++s++h+kv gR+RRvR++a +aar+F+L++eLG+ +d++tieWLl+qa+p+i+++tgt+ +++++ LOC_Os04g11830.1 52 RKSPSSSDRHSKVAGRGRRVRIPAMVAARVFQLTRELGHRTDGETIEWLLRQAEPSIIAATGTGVTPEEAPpaavA 127 577899*********************************************************7666633322221 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 4.9E-28 | 56 | 130 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 25.848 | 57 | 111 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007275 | Biological Process | multicellular organism development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020039 | anatomy | leaf lamina |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MMASSSDLIL YNLVPAQPLN PSAIPNPNPD LSIAAAEPPS SDGATPRRVR PRKSPSSSDR 60 HSKVAGRGRR VRIPAMVAAR VFQLTRELGH RTDGETIEWL LRQAEPSIIA ATGTGVTPEE 120 APPAAVAIGS SSVAAAAAAG GHGGAFVHVP YYTALLMQPP NADEPPMASA ASASGTTAAD 180 ENNN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 46 | 52 | RRVRPRK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.53807 | 0.0 | callus| flower| panicle |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32985389 | 0.0 | ||||
Expression Atlas | O23875 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings and leaves, mostly in the lower region rich in dividing cells. {ECO:0000269|PubMed:9338963}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681, ECO:0000269|PubMed:9338963}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os04g11830.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os04g11830 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL607008 | 0.0 | AL607008.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0026E15, complete sequence. | |||
GenBank | AL662965 | 0.0 | AL662965.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0040D17, complete sequence. | |||
GenBank | AP014960 | 0.0 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015633587.1 | 1e-128 | transcription factor PCF1 | ||||
Swissprot | O23875 | 1e-127 | PCF1_ORYSJ; Transcription factor PCF1 | ||||
TrEMBL | I1PJA9 | 1e-126 | I1PJA9_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA04G0027800.1 | 1e-127 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14172 | 26 | 27 | Representative plant | OGRP922 | 14 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69690.1 | 8e-28 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os04g11830.1 |
Publications ? help Back to Top | |||
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