PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os04g10860.1
Common NameOSJNBb0003A12.15
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 526aa    MW: 60560.8 Da    PI: 6.4643
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os04g10860.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR172.68.8e-231099190
              FAR1  1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90
                      kfY +YAk  GFsvrk++ k++  +gei++r+fvCs eg+re ++ +  e++r++ a t++gC akl+++ ++ +g+w v++++++H+Hela
  LOC_Os04g10860.1 10 KFYLDYAKGKGFSVRKNNLKRK--DGEIIWRQFVCSSEGYRELKHFErIERKREPWALTHCGCLAKLEIEWNEeKGVWFVKEFNNQHTHELA 99
                      6****************99887..9*****************99988578899999**************9999****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.4E-211099IPR004330FAR1 DNA binding domain
PfamPF105519.3E-24221299IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MTSSYEEGYK FYLDYAKGKG FSVRKNNLKR KDGEIIWRQF VCSSEGYREL KHFERIERKR  60
EPWALTHCGC LAKLEIEWNE EKGVWFVKEF NNQHTHELAN PDHVAFLGVH RVVSDSKKAQ  120
AVELRMSGLR PFQIMEVMEN NHDESEEVGF VMKDLYNFFT RYEMKNIKGR DAEDMLKYLT  180
RKQEEDPEFF FKYTTDEEGR LRNVFWADAE SGLNYAAFGG VVIFDSTYRV NKYNLPFIPF  240
IGVNHHRSTT IFGCGILSNE SVNSYYWLLE TFLEAMRQVH PKSLITDGDL AMANAISKLC  300
IQHLRKKEAQ LDAKCTNSLP FCRIDADPLE KDAARIFTAV VFKNVRAQIR LIAGLEVISG  360
TNQDGSSLYV VGLKDDNEAL EGVECHCRKM ECEDIPCSDI FVVLKFLGFD TIPRCCVVDR  420
WTMGAKAAFR SDRNTDPNVW SKHMVRFRSL RNLGSDAFFE AARNPEQTEK AMDFLKGILD  480
KGSSSHENIV AGDFGPMPTH FLSNNQPLEK RAFFDIHDAH MWDLS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.801530.0root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2976024520.0
Expression AtlasQ7XRH4-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os04g10860.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs04g10860
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL7316200.0AL731620.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0003A12, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611098.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLQ7XRH40.0Q7XRH4_ORYSJ; OSJNBb0003A12.15 protein
STRINGSi028177m1e-161(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.19e-57FAR1-related sequence 5