PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os04g10260.1
Common NameLOC107275813, Os04g0181300, OsJ_13975, OSJNBa0027O01.8, OSNPB_040181300
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bZIP
Protein Properties Length: 427aa    MW: 46579.7 Da    PI: 6.8962
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os04g10260.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_120.51e-06292349562
                       CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                       +r +r   NR +A++s ++K + + eL++k ++L++e ++L  ++  ++ +  +l s+
  LOC_Os04g10260.1 292 RRVKRILNNRASATKSKEKKMKHVGELQRKLQVLQSETTTLGAQVTVMQRNNNELVSQ 349
                       5789999********************************9988877766666666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.7E-12288352IPR004827Basic-leucine zipper domain
PfamPF077163.1E-5289338IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.979290353IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.9E-6292349No hitNo description
SuperFamilySSF579592.11E-9292348No hitNo description
CDDcd147031.29E-18293344No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MEGEPSRRLS LLDRCDDGSE DPVVPPRVPT ILNLTSHHRL DRSKFLPLIH PTPARFISST  60
GSSFPPYSEP PPSAPMLELG SGFGPEDLYS FFPNHFFLME SISLPPYDVV DVPPVIPVAL  120
RSGRSNQGLP SKLPLIEGHR RSHSDIPFGY SQEHPQMPPV ASVKPEVTTI KGHQLEDVAA  180
AALKDMGIQA WSPSGSIDKE VKSSGAGSTT HHCRSLSVDS FMMGNLNFGV VGQQMSSPPL  240
LTTEVNVGGG EPIGSTASPF AAELANVKFT EDEKKKIVMD KSLSEIVLTD PRRVKRILNN  300
RASATKSKEK KMKHVGELQR KLQVLQSETT TLGAQVTVMQ RNNNELVSQN NELKTRLQAM  360
DQLAQLGDAL TSRLAAEAQH LRAVVSEISD PNLPSGSHQQ LSSDIDQLQQ LLTQRQTSQI  420
QHNQPQ*
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ7XXC1
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os04g10260.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs04g10260
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6629340.0AL662934.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0027O01, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635275.10.0uncharacterized protein LOC107275813
TrEMBLQ7XXC10.0Q7XXC1_ORYSJ; OSJNBa0027O01.8 protein
STRINGOS04T0181300-000.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP147931112
Representative plantOGRP12617181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21230.14e-43bZIP family protein