PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os04g08290.1
Common NameOs04g0165200, OSJNBa0019G23.4, OSNPB_040165200
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 372aa    MW: 38884.6 Da    PI: 7.884
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os04g08290.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.43.1e-07203225123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       + C+ Cgk F+r  nL+ H+r H
  LOC_Os04g08290.1 203 HYCQVCGKGFKRDANLRMHMRAH 225
                       68*******************99 PP
2zf-C2H212.90.00034289312123
                       EEETTTT.EEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCg.ksFsrksnLkrHirtH 23 
                       y+C+ Cg k F   s+L++H + +
  LOC_Os04g08290.1 289 YVCGRCGgKQFAVLSDLRTHEKHC 312
                       9*******************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000180180192IPR018247EF-Hand 1, calcium-binding site
SuperFamilySSF576674.85E-6202229No hitNo description
PROSITE profilePS5015712.653203230IPR007087Zinc finger, C2H2
SMARTSM003550.0034203225IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.2E-6203229IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280205225IPR007087Zinc finger, C2H2
SMARTSM00355110251284IPR015880Zinc finger, C2H2-like
SMARTSM0035530289311IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000032anatomytetrad of microspores
PO:0001029developmental stageE tetrad stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MNPQEFQFFQ GVEQEMLLLS HGGGGAAAAA SDDVLAYHVG VLRDKVQQLE PLVGMVVVSP  60
AAPHGQLRRD AAAMAASSAC SVLQEITAAA SAVAHRLEQA NAASSASFRR GVAFADDAHA  120
AGGVQMFAAG AHGGGQGGDD EAGASLFHHH GPPAVGAPTV FRAGATTTAA ASSSGGGDDD  180
GDGDGEVDVV ELEASYLLAR YTHYCQVCGK GFKRDANLRM HMRAHGDEYK TAAALTSTGA  240
GMRAAARRCS YSCPAEGCRW NRRHPRFQAL KSVVCAKNHY RRSHCPKMYV CGRCGGKQFA  300
VLSDLRTHEK HCGELRWLCS CGTFFSRKDK LMGHVALFAA GHAPVPVAPE ASPSTTTTGT  360
TTDRSRTGLI D*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.766170.0root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1160126500.0
Expression AtlasQ7XXA5-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os04g08290.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs04g08290
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2432850.0AK243285.1 Oryza sativa Japonica Group cDNA, clone: J100051N01, full insert sequence.
GenBankAL6629590.0AL662959.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0019G23, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635006.10.0protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLQ7XXA50.0Q7XXA5_ORYSJ; OSJNBa0019G23.4 protein
STRINGOS04T0165200-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74413251
Representative plantOGRP8301663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.13e-79C2H2 family protein