PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os04g08060.1 | ||||||||
Common Name | LOC4335039, OsJ_13762, OSJNBb0028M18.8, OSJNBb0050N09.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | C2H2 | ||||||||
Protein Properties | Length: 343aa MW: 35129.7 Da PI: 5.8883 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.7 | 0.00079 | 240 | 262 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F + L H+r+H LOC_Os04g08060.1 240 HECSICGAEFASGQALGGHMRRH 262 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.95E-8 | 131 | 154 | No hit | No description |
Pfam | PF13912 | 6.7E-11 | 131 | 156 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.24 | 132 | 154 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.201 | 132 | 159 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 134 | 154 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.95E-8 | 235 | 262 | No hit | No description |
Pfam | PF13912 | 1.5E-12 | 239 | 263 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.016 | 240 | 262 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.263 | 240 | 267 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 242 | 262 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 343 aa Download sequence Send to blast |
MGVQEEAALA AAVVKGKRSK RQRAHAAVVP IAASATAEEE ESMESSLSLS GGAAAEGSST 60 TSPLLTTTAA RGDEAVSGCV TEEEEDMALC LMLLASGGHG ERAPDAEAVA AKEAKFRSRR 120 PADGAGAGEF VYECKTCSKC FPSFQALGGH RTSHKKPRLV APPAAMEPAA DDKIKPTIPE 180 TAAAAAEEKP PKPSPPRPPA SRPIATDPTV LAIPVIPKQE VLDATNSAAI ASVSKQPRVH 240 ECSICGAEFA SGQALGGHMR RHRPLIPASA SSAVVSVLDA VDAPRQKEKS LLELDLNMPA 300 PCDDATAETT TTSSAATSPA FAFAVSDRSP LLVPAALVGC HY* |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 116634010 | 0.0 | ||||
Expression Atlas | Q7XSM9 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os04g08060.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os04g08060 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL606603 | 0.0 | AL606603.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0050N09, complete sequence. | |||
GenBank | AL606654 | 0.0 | AL606654.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0028M18, complete sequence. | |||
GenBank | AP014960 | 0.0 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015634434.1 | 0.0 | zinc finger protein ZAT5 | ||||
TrEMBL | Q7XSM9 | 0.0 | Q7XSM9_ORYSJ; OSJNBb0028M18.8 protein | ||||
STRING | ORUFI04G02810.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2013 | 32 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04390.1 | 1e-27 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os04g08060.1 |
Entrez Gene | 4335039 |