PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os04g08060.1
Common NameLOC4335039, OsJ_13762, OSJNBb0028M18.8, OSJNBb0050N09.1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 343aa    MW: 35129.7 Da    PI: 5.8883
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os04g08060.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.00079240262123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C++Cg  F +   L  H+r+H
  LOC_Os04g08060.1 240 HECSICGAEFASGQALGGHMRRH 262
                       78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.95E-8131154No hitNo description
PfamPF139126.7E-11131156IPR007087Zinc finger, C2H2
SMARTSM003550.24132154IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.201132159IPR007087Zinc finger, C2H2
PROSITE patternPS000280134154IPR007087Zinc finger, C2H2
SuperFamilySSF576671.95E-8235262No hitNo description
PfamPF139121.5E-12239263IPR007087Zinc finger, C2H2
SMARTSM003550.016240262IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.263240267IPR007087Zinc finger, C2H2
PROSITE patternPS000280242262IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MGVQEEAALA AAVVKGKRSK RQRAHAAVVP IAASATAEEE ESMESSLSLS GGAAAEGSST  60
TSPLLTTTAA RGDEAVSGCV TEEEEDMALC LMLLASGGHG ERAPDAEAVA AKEAKFRSRR  120
PADGAGAGEF VYECKTCSKC FPSFQALGGH RTSHKKPRLV APPAAMEPAA DDKIKPTIPE  180
TAAAAAEEKP PKPSPPRPPA SRPIATDPTV LAIPVIPKQE VLDATNSAAI ASVSKQPRVH  240
ECSICGAEFA SGQALGGHMR RHRPLIPASA SSAVVSVLDA VDAPRQKEKS LLELDLNMPA  300
PCDDATAETT TTSSAATSPA FAFAVSDRSP LLVPAALVGC HY*
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1166340100.0
Expression AtlasQ7XSM9-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os04g08060.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs04g08060
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6066030.0AL606603.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0050N09, complete sequence.
GenBankAL6066540.0AL606654.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0028M18, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634434.10.0zinc finger protein ZAT5
TrEMBLQ7XSM90.0Q7XSM9_ORYSJ; OSJNBb0028M18.8 protein
STRINGORUFI04G02810.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20133285
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.11e-27C2H2 family protein