PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os04g04400.1
Common NameOSJNBa0095H06.13
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 684aa    MW: 77400.6 Da    PI: 7.9097
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os04g04400.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR161.13.3e-19151230290
              FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                       fYn YA+ +GF +r+sk++++ ++g   +++f+C +eg++++ +          + tr+gCka++++++++ ++kw+v+ + +eHnHe+ 
  LOC_Os04g04400.1 151 FYNLYARFTGFGIRRSKNRYK-DEGVKSMQEFCCIREGRDNSVT---------GPPTRIGCKAMVRLNRSSeSQKWRVSAFISEHNHEMK 230
                       9***************99987.88889***********988754.........569**************99***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.3E-13151229IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 684 aa     Download sequence    Send to blast
MSSARSVASP SAAQVGGGSS ARDVEQQKSV VAVGASSPVS SSKQHNLAKE ENGTITANGD  60
KQQKPAADRG SYQSPCWTET IFTEIGMEEE GWPEKGGEDH SGQPMDVVPL ERIVVEGEED  120
SDLLPISLSD PAILLPEIGQ TFNEDSNGYA FYNLYARFTG FGIRRSKNRY KDEGVKSMQE  180
FCCIREGRDN SVTGPPTRIG CKAMVRLNRS SESQKWRVSA FISEHNHEMK RDLQHTKHFR  240
SHNFIDEGTK RNIKEMVDNG MTPTAMYGLL SDNCHQMEVA IKAVWPETTH RVCKWHILKS  300
AKENLGNIYS KRSSFKQEFH RVLNEPQTEA EFEKAWMWDM KKKWAPAYFR EFFFARMSTT  360
QRSESMNHVL KKYEKPSSSL HGFAKRYENF YNDRIEAEDG EEHDTYNEKV STLTSLPIEK  420
HASRVYTRGA FSRFKEQFKL SFSFMYGFTE IPKKYILKRW TKDARDSIPK HLEESYLKDK  480
EAASSRTYRN TLLHKSALDM VRLGGTSSET YEKTLEVLTK LIGELQVMCT SQVVNNKEIH  540
CGDRTIGKKP TGVQLDDSVD SSDSEHGMPD DFCVADEDGI GQDVSAGEDS VDVDMTDVNE  600
EDILPPEVRR SRGRPRSTRL MSKGETSSKA KKKASESTSK DESKNHAKGK KESTKQIRYC  660
KQCGGHGHYK ITCGQKSSYE RKK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.123040.0panicle
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ7XS06
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os04g04400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs04g04400
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6629850.0AL662985.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0095H06, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLQ7XS060.0Q7XS06_ORYSJ; OSJNBa0095H06.13 protein
STRINGORGLA04G0274800.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1594035
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-27FAR1-related sequence 5