PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os04g04300.1 | ||||||||
Common Name | OSJNBa0095H06.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | WRKY | ||||||||
Protein Properties | Length: 199aa MW: 21102.9 Da PI: 6.0916 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 24.4 | 5.8e-08 | 2 | 23 | 15 | 35 |
-TT-SS-EEEEEE-ST.T---E CS WRKY 15 vkgsefprsYYrCtsa.gCpvk 35 kg+++pr+YYrCt a gCp+ LOC_Os04g04300.1 2 AKGNPCPRAYYRCTVAvGCPAA 23 59*************99**985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 10.12 | 1 | 22 | IPR003657 | WRKY domain |
SMART | SM00774 | 0.006 | 1 | 37 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.3E-4 | 2 | 23 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.32E-5 | 2 | 23 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 5.9E-5 | 2 | 23 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MAKGNPCPRA YYRCTVAVGC PAAVAKSSSA NAATTEMLEL LRDFSDYSSF NSDISSELER 60 LAAAVTPRSD APQVAAVDLN GGSSSSSRLT TTTPPPLLQL GCRQALPFIV PTGRCASLAA 120 VVEEISGRRA SPPWMSAAGD AVAVIPSYEN HVTEVSTCVK HSSSHTDIDR LRLSITTPFH 180 DYDVITLIDK IINPLFWC* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.27414 | 3e-39 | callus| flower| leaf| panicle| root| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 116641491 | 3e-39 | ||||
Expression Atlas | Q7XS15 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os04g04300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os04g04300 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL662985 | 0.0 | AL662985.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0095H06, complete sequence. | |||
GenBank | AP014960 | 0.0 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0E0P4W4 | 1e-142 | A0A0E0P4W4_ORYRU; Uncharacterized protein | ||||
TrEMBL | Q7XS15 | 1e-142 | Q7XS15_ORYSJ; OSJNBa0095H06.3 protein | ||||
STRING | ORUFI04G01750.1 | 1e-143 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP23427 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G04450.1 | 1e-09 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os04g04300.1 |