PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LOC_Os04g02510.1 | ||||||||
Common Name | LOC4334944, Os04g0115500, OsJ_13566, OSNPB_040115500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 481aa MW: 50184.4 Da PI: 9.7629 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.2 | 3e-05 | 242 | 264 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 C+ Cg++F+ ++L++H+ H LOC_Os04g02510.1 242 ACSQCGEVFNKADSLEHHQAIrH 264 6******************9877 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE pattern | PS00028 | 0 | 241 | 264 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.473 | 241 | 269 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF56399 | 5.32E-17 | 266 | 477 | No hit | No description |
Gene3D | G3DSA:3.90.228.10 | 6.7E-4 | 400 | 478 | IPR012317 | Poly(ADP-ribose) polymerase, catalytic domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003950 | Molecular Function | NAD+ ADP-ribosyltransferase activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Plant Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PO Term | PO Category | PO Description | ||||
PO:0009005 | anatomy | root |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 481 aa Download sequence Send to blast |
MALSTLLLPS SSSSSSKTAT ATDTSDRRRH HHHHNHTKRK KKPPPPPLSP TPRTPPPAGS 60 GSHRAMAASS KKSTKQVVVA AKTTTGHRPK KAAAAPTTPS RGAPSASAAP VSSSWEQLKS 120 LLSCRSATAA ARVHDPAAPS SALSRLRSHG AGACGASLCA IRDVVDAASS ASAASTAAAS 180 LDRDTTPLTR SSRRAHRAAT SSSGGGGGHH ASLRGLSGCY ECRAINVEPM SRRYPRPREL 240 CACSQCGEVF NKADSLEHHQ AIRHAVSELG PEDSGRNIVE IIFKSSWQKR DRPICQIDRI 300 LKVHNAARTV ARFEAYRDAV RTRCRATAAR AAADGNELLR FHPAALACPL GLNGATSLCD 360 DDDACGVCAA IRHGFAPWAG AHPLGVRTTA SSGRAHDCGA AAAAAQQAGG CRAMLVCRVI 420 AGRVRRNDDD GGAEEEEGAF DSVAGDEAAS SVYGNLEELF VANPRAILPC FVVIYRVVPE 480 * |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 26 | 41 | RRRHHHHHNHTKRKKK |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Os.27727 | 0.0 | leaf |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | E-value | ||||
GEO | 115456883 | 0.0 | ||||
Expression Atlas | Q0JFD1 | - |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LOC_Os04g02510.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
RiceGE | Os04g02510 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EU226811 | 0.0 | EU226811.1 Oryza sativa Japonica Group isolate E03 putative nucleic acid binding protein (Os04g02510) gene, complete sequence. | |||
GenBank | EU226812 | 0.0 | EU226812.1 Oryza sativa Japonica Group isolate E04 putative nucleic acid binding protein (Os04g02510) gene, complete sequence. | |||
GenBank | EU226813 | 0.0 | EU226813.1 Oryza sativa Japonica Group isolate E05 putative nucleic acid binding protein (Os04g02510) gene, complete sequence. | |||
GenBank | EU226815 | 0.0 | EU226815.1 Oryza sativa Japonica Group isolate E07 putative nucleic acid binding protein (Os04g02510) gene, complete sequence. | |||
GenBank | EU226817 | 0.0 | EU226817.1 Oryza sativa Japonica Group isolate E09 putative nucleic acid binding protein (Os04g02510) gene, complete sequence. | |||
GenBank | EU226819 | 0.0 | EU226819.1 Oryza sativa Japonica Group isolate E11 putative nucleic acid binding protein (Os04g02510) gene, complete sequence. | |||
GenBank | EU226822 | 0.0 | EU226822.1 Oryza sativa Japonica Group isolate F02 putative nucleic acid binding protein (Os04g02510) gene, complete sequence. | |||
GenBank | EU226823 | 0.0 | EU226823.1 Oryza sativa Japonica Group isolate F03 putative nucleic acid binding protein (Os04g02510) gene, complete sequence. | |||
GenBank | EU226824 | 0.0 | EU226824.1 Oryza sativa Japonica Group isolate F04 putative nucleic acid binding protein (Os04g02510) gene, complete sequence. | |||
GenBank | EU226825 | 0.0 | EU226825.1 Oryza sativa Japonica Group isolate F05 putative nucleic acid binding protein (Os04g02510) gene, complete sequence. | |||
GenBank | EU226826 | 0.0 | EU226826.1 Oryza sativa Japonica Group isolate F06 putative nucleic acid binding protein (Os04g02510) gene, complete sequence. | |||
GenBank | EU226827 | 0.0 | EU226827.1 Oryza sativa Japonica Group isolate F07 putative nucleic acid binding protein (Os04g02510) gene, complete sequence. | |||
GenBank | EU226828 | 0.0 | EU226828.1 Oryza sativa Japonica Group isolate F08 putative nucleic acid binding protein (Os04g02510) gene, complete sequence. | |||
GenBank | EU226829 | 0.0 | EU226829.1 Oryza sativa Japonica Group isolate F09 putative nucleic acid binding protein (Os04g02510) gene, complete sequence. | |||
GenBank | EU226831 | 0.0 | EU226831.1 Oryza sativa Japonica Group isolate F11 putative nucleic acid binding protein (Os04g02510) gene, complete sequence. | |||
GenBank | EU226835 | 0.0 | EU226835.1 Oryza rufipogon isolate G03 putative nucleic acid binding protein (Os04g02510) gene, complete sequence. | |||
GenBank | EU226839 | 0.0 | EU226839.1 Oryza rufipogon isolate G07 putative nucleic acid binding protein (Os04g02510) gene, complete sequence. | |||
GenBank | EU226847 | 0.0 | EU226847.1 Oryza rufipogon isolate H03 putative nucleic acid binding protein (Os04g02510) gene, complete sequence. | |||
GenBank | EU226848 | 0.0 | EU226848.1 Oryza rufipogon isolate H04 putative nucleic acid binding protein (Os04g02510) gene, complete sequence. | |||
GenBank | EU226852 | 0.0 | EU226852.1 Oryza rufipogon isolate H08 putative nucleic acid binding protein (Os04g02510) gene, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015634299.1 | 0.0 | uncharacterized protein LOC4334944 | ||||
TrEMBL | A0A0E0P4K3 | 0.0 | A0A0E0P4K3_ORYRU; Uncharacterized protein | ||||
TrEMBL | Q0JFD1 | 0.0 | Q0JFD1_ORYSJ; Os04g0115500 protein | ||||
STRING | ORUFI04G00820.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | OS04T0115500-00 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12431 | 27 | 31 | Representative plant | OGRP661 | 14 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G75710.1 | 1e-65 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | LOC_Os04g02510.1 |
Entrez Gene | 4334944 |