PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os04g02140.1
Common NameOs04g0112200
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family E2F/DP
Protein Properties Length: 495aa    MW: 53766.6 Da    PI: 4.7855
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os04g02140.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP82.63.2e-26193258171
           E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                       r+++sL+llt+kf++lle +e+g+++ln++a++L   +v  ++RRiYDi+NVLe+++liek+ kn irwkg
  LOC_Os04g02140.1 193 RYDSSLGLLTKKFINLLEGAEDGTLDLNKAAETL---EV--QKRRIYDITNVLEGVDLIEKTLKNMIRWKG 258
                       6899******************************...99..****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR012171.1E-9824No hitNo description
PRINTSPR012171.1E-93345No hitNo description
PRINTSPR012171.1E-95475No hitNo description
PRINTSPR012171.1E-98096No hitNo description
Gene3DG3DSA:1.10.10.106.1E-28190259IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.77E-16193256IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013727.7E-34193258IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.3E-23195258IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd146601.91E-33299405No hitNo description
SuperFamilySSF1440742.07E-23299404No hitNo description
PfamPF164212.1E-23299402IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MDGSAAIPPR PAPTPPAPAP APPQVFLRRS VLPPPPAPHH APPPPGAHVH YFRAASPIPI  60
FRAAASSRPP RPPPPSTTTA PPPPAAPAVT PARPPPQQPA VAVAAPPPAT TMATATEEVA  120
APATGNPMAN AADNEEKNER ETVQSEVAKG ETVQGPDKEC TTGAVKGIKR PRKPKGFKKG  180
DAGPSLFSPN NCRYDSSLGL LTKKFINLLE GAEDGTLDLN KAAETLEVQK RRIYDITNVL  240
EGVDLIEKTL KNMIRWKGFD MSKPKERERQ ISALKLLELN SITMTVTVPF YVPSKETMEE  300
IESLYDEESR LDDEIMEAQE KLNALRVDED RRKLLYVSKE DINAIPRFQG STLIAVNAPR  360
GTYIEVPDPN LDMDIYKDLD NQEKHYQIVF RSAMGPVDCF LISNHQETFN ADQQMADNLD  420
AAVTSGSSQA PQQMDYVQAS EIGESNGVRE HTSEPSKRDD PVPGIVKIVP SDDIAADYWL  480
SSDADVSMTD TWGT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A7e-20193258773PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.607300.0callus| panicle
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasC7J1I3
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os04g02140.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs04g02140
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6066120.0AL606612.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0021I10, complete sequence.
GenBankAL6066160.0AL606616.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0060M15, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633977.10.0transcription factor E2FC
TrEMBLC7J1I30.0C7J1I3_ORYSJ; Os04g0112200 protein
STRINGORUFI04G00690.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62537148
Representative plantOGRP1478044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22220.31e-75E2F transcription factor 1