PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LOC_Os03g64260.1 | ||||||||
Common Name | LOC4334864, Os03g0860100, OSNPB_030860100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 226aa MW: 24165 Da PI: 6.5094 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.7 | 1.4e-18 | 80 | 129 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++GVr ++ +g+++AeIrd + ng r++lg+f++aeeAa a+++a+ +++g LOC_Os03g64260.1 80 FRGVRKRP-WGKFAAEIRDSTRNG--VRVWLGTFDSAEEAALAYDQAAFAMRG 129 79******.**********44465..*************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 2.4E-36 | 79 | 143 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.682 | 79 | 137 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.7E-30 | 79 | 138 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.29E-22 | 80 | 139 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 3.6E-10 | 80 | 91 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.8E-13 | 80 | 129 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.60E-29 | 80 | 137 | No hit | No description |
PRINTS | PR00367 | 3.6E-10 | 103 | 119 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PO Term | PO Category | PO Description | ||||
PO:0009005 | anatomy | root |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 226 aa Download sequence Send to blast |
MHCCMSLHPH RRHGDGDVDG SASGSGSARL TAGLINFLES RRAGAMSTTN SSSSVSVPAM 60 DAHGQEEEEE PMQVQQQQAF RGVRKRPWGK FAAEIRDSTR NGVRVWLGTF DSAEEAALAY 120 DQAAFAMRGS AAVLNFPMEQ VRRSMDMSLL QEGASPVVAL KRRHSMRAAA AGRRRKSAAP 180 APADQEGGGG VMELEDLGPD YLEELLAASQ PIDITCCTSP SHHSI* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 5e-28 | 80 | 139 | 15 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 160 | 175 | KRRHSMRAAAAGRRRK |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Os.56144 | 0.0 | stem |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | E-value | ||||
GEO | 42821705 | 0.0 | ||||
Expression Atlas | Q10A97 | - |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00286 | DAP | Transfer from AT2G31230 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LOC_Os03g64260.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
RiceGE | Os03g64260 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC092263 | 0.0 | AC092263.7 Oryza sativa chromosome 3 BAC OSJNBa0033P04 genomic sequence, complete sequence. | |||
GenBank | AK109390 | 0.0 | AK109390.2 Oryza sativa Japonica Group cDNA clone:006-211-G07, full insert sequence. | |||
GenBank | AP014959 | 0.0 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015629379.1 | 1e-165 | ethylene-responsive transcription factor 15 | ||||
Swissprot | A0A3Q7I5Y9 | 7e-50 | ERFC3_SOLLC; Ethylene-response factor C3 | ||||
TrEMBL | Q10A97 | 1e-164 | Q10A97_ORYSJ; AP2 domain containing protein, expressed | ||||
STRING | OS03T0860100-01 | 1e-165 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP277 | 37 | 249 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G23240.1 | 1e-30 | ethylene response factor 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | LOC_Os03g64260.1 |
Entrez Gene | 4334864 |
Publications ? help Back to Top | |||
---|---|---|---|
|