PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g63890.1
Common NameOs03g0855900, Os03g63890, OsJ_13426, OSNPB_030855900
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB_related
Protein Properties Length: 88aa    MW: 9561.03 Da    PI: 4.7516
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g63890.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding292.5e-09448344
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
   Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                      +W++ E  ++ +a + + ++   +W++Ia  +g g+t+ +++ ++
  LOC_Os03g63890.1  4 SWSESENARFEQALATYDSDnpnRWELIATAVGGGKTADDVRRHY 48
                      6*******************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007174.5E-7154IPR001005SANT/Myb domain
PROSITE profilePS500906.551152IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.1E-6455IPR009057Homeodomain-like
CDDcd001672.21E-7448No hitNo description
PfamPF002496.7E-8448IPR001005SANT/Myb domain
SuperFamilySSF466891.64E-11459IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 88 aa     Download sequence    Send to blast
MAASWSESEN ARFEQALATY DSDNPNRWEL IATAVGGGKT ADDVRRHYDH LQHDVTTIDD  60
DHSHAAGEAL PNGNNNNNTN KGNRNQA*
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ75IQ0
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g63890.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g63890
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1286471e-133AC128647.8 Oryza sativa Japonica Group cultivar Nipponbare chromosome 3 clone OSJNBb0062G19, complete sequence.
GenBankAP0149591e-133AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126111e-133CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025879511.12e-58protein RADIALIS-like 3
SwissprotF4JVB81e-16RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLA0A0D9ZG115e-57A0A0D9ZG11_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0GWX15e-57A0A0E0GWX1_ORYNI; Uncharacterized protein
TrEMBLA0A0E0P4405e-57A0A0E0P440_ORYRU; Uncharacterized protein
TrEMBLA2XP875e-57A2XP87_ORYSI; Uncharacterized protein
TrEMBLI1PHJ85e-57I1PHJ8_ORYGL; Uncharacterized protein
TrEMBLQ75IQ05e-57Q75IQ0_ORYSJ; Myb family transcription factor, putative
STRINGOGLUM03G41360.18e-58(Oryza glumipatula)
STRINGORUFI03G43310.18e-58(Oryza rufipogon)
STRINGONIVA03G44040.18e-58(Oryza nivara)
STRINGORGLA03G0384400.18e-58(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230
Representative plantOGRP3471298
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.15e-19RAD-like 1
Publications ? help Back to Top
  1. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]