PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os03g63890.1 | ||||||||
Common Name | Os03g0855900, Os03g63890, OsJ_13426, OSNPB_030855900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | MYB_related | ||||||||
Protein Properties | Length: 88aa MW: 9561.03 Da PI: 4.7516 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29 | 2.5e-09 | 4 | 48 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 +W++ E ++ +a + + ++ +W++Ia +g g+t+ +++ ++ LOC_Os03g63890.1 4 SWSESENARFEQALATYDSDnpnRWELIATAVGGGKTADDVRRHY 48 6*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 4.5E-7 | 1 | 54 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 6.551 | 1 | 52 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-6 | 4 | 55 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.21E-7 | 4 | 48 | No hit | No description |
Pfam | PF00249 | 6.7E-8 | 4 | 48 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.64E-11 | 4 | 59 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 88 aa Download sequence Send to blast |
MAASWSESEN ARFEQALATY DSDNPNRWEL IATAVGGGKT ADDVRRHYDH LQHDVTTIDD 60 DHSHAAGEAL PNGNNNNNTN KGNRNQA* |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q75IQ0 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os03g63890.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os03g63890 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC128647 | 1e-133 | AC128647.8 Oryza sativa Japonica Group cultivar Nipponbare chromosome 3 clone OSJNBb0062G19, complete sequence. | |||
GenBank | AP014959 | 1e-133 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012611 | 1e-133 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025879511.1 | 2e-58 | protein RADIALIS-like 3 | ||||
Swissprot | F4JVB8 | 1e-16 | RADL1_ARATH; Protein RADIALIS-like 1 | ||||
TrEMBL | A0A0D9ZG11 | 5e-57 | A0A0D9ZG11_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0GWX1 | 5e-57 | A0A0E0GWX1_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0P440 | 5e-57 | A0A0E0P440_ORYRU; Uncharacterized protein | ||||
TrEMBL | A2XP87 | 5e-57 | A2XP87_ORYSI; Uncharacterized protein | ||||
TrEMBL | I1PHJ8 | 5e-57 | I1PHJ8_ORYGL; Uncharacterized protein | ||||
TrEMBL | Q75IQ0 | 5e-57 | Q75IQ0_ORYSJ; Myb family transcription factor, putative | ||||
STRING | OGLUM03G41360.1 | 8e-58 | (Oryza glumipatula) | ||||
STRING | ORUFI03G43310.1 | 8e-58 | (Oryza rufipogon) | ||||
STRING | ONIVA03G44040.1 | 8e-58 | (Oryza nivara) | ||||
STRING | ORGLA03G0384400.1 | 8e-58 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP270 | 38 | 230 | Representative plant | OGRP347 | 12 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39250.1 | 5e-19 | RAD-like 1 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os03g63890.1 |
Publications ? help Back to Top | |||
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