PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g63530.2
Common NameLOC4334810, Os03g0852300, OSNPB_030852300
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NF-YC
Protein Properties Length: 304aa    MW: 32855.4 Da    PI: 11.1191
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g63530.2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC38.32.9e-121952841099
             NF-YC  10 iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 
                        e ++d    ++P+ar+++i++a++   + s ea  l+ ka e+f+  ++  ++ +a + +++++   ++++av + + ++fl d vp++
  LOC_Os03g63530.2 195 AEAVADHGAGSFPMARVRQIMRAEDATIRPSNEAVFLINKATEIFLKRFADDAYRNALKDRKKSIVYDNLSTAVCNQKRYKFLSDFVPQK 284
                       56777888889****************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471137.3E-19183284IPR009072Histone-fold
PfamPF008088.7E-13205268IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.5E-20206283IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020048anatomymicrospore
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MAGKKKALTN PASPSASASA STPKKSTATS KDRSTPKPRK NPNPKEEAPP PPPANNKRLN  60
PQGGSNRKKK ADAGTPSKKP KRQPPEPKPR KHKGAKSEKP HRVSGEGEKP TPTKKKKKKE  120
SSKEPKREKQ QASAPMSTPS KKNKEAKRDT GGAGKPTPTK RKLGDVDPPQ ERPSGEGQAS  180
SPTPAKKRKD KAAAAEAVAD HGAGSFPMAR VRQIMRAEDA TIRPSNEAVF LINKATEIFL  240
KRFADDAYRN ALKDRKKSIV YDNLSTAVCN QKRYKFLSDF VPQKVTAEDA LKAPVSSQVN  300
QPQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17790KKPKRQPPEPKPRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.192700.0callus| leaf| panicle| seed
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329888160.0
Expression AtlasQ10AH3-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g63530.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g63530
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1036070.0AK103607.1 Oryza sativa Japonica Group cDNA clone:J033133H15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628750.10.0nuclear pore complex-interacting protein family member B13
RefseqXP_015628751.10.0nuclear pore complex-interacting protein family member B13
TrEMBLQ10AH30.0Q10AH3_ORYSJ; Histone-like transcription factor and archaeal histone family protein, expressed
STRINGOS03T0852300-010.0(Oryza sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07980.14e-27nuclear factor Y, subunit C10