PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g62660.1
Common NameLOC4334752, Os03g0843700, OSJNBa0032G11.9, OSNPB_030843700
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 787aa    MW: 89579.9 Da    PI: 6.1052
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g62660.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR158.22.7e-1842126191
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                       +fY++YA ++GF v+++ks+ + + g + +  +vC+k+g  +e+        + r++ +t+C+a+++ ++++dg  ++++++leHnH+l+p
  LOC_Os03g62660.1  42 NFYKRYALRTGFGVCVKKSSFT-KAGLCRRLVLVCNKWGDGKEDACY-----QARPTAKTNCQATVVARLWSDGLLHLMDVNLEHNHALNP 126
                       6*****************9998.6777****************9999.....999*********************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.1E-1642126IPR004330FAR1 DNA binding domain
PfamPF105513.3E-26229321IPR018289MULE transposase domain
PROSITE profilePS509669.285510546IPR007527Zinc finger, SWIM-type
SMARTSM005750.002521548IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009009anatomyplant embryo
PO:0001081developmental stagemature plant embryo stage
PO:0007042developmental stagewhole plant fruit formation stage
Sequence ? help Back to Top
Protein Sequence    Length: 787 aa     Download sequence    Send to blast
MVDAAAAAAE CGELDGTDAM AYGDDRTPRD GMVFKSYEEV LNFYKRYALR TGFGVCVKKS  60
SFTKAGLCRR LVLVCNKWGD GKEDACYQAR PTAKTNCQAT VVARLWSDGL LHLMDVNLEH  120
NHALNPSAAR FLRCYKTLPS GMSKDLVVRA ARGECSTSGD IEVPIFDDWG RLKIGEDDVA  180
AINGFFADMQ AKQANFFYLM DFYGEGHLRS VFWADSRSRA AYQYFNDAVW IDTTCLRNRF  240
DTPLVLFLGV NHHGELVLLG CGLFSDESTE SFLWLLKSWL TCMKGWPPNA IVTDDCAAIK  300
AAVREVFPNA RHRISDWHVL RSISEKLGES AQFEGMKTEL ETVIYDSLKD DEFEARWNNL  360
ISRFGLQDNE WITFLYENRH FWVPAFLKDT FWAGLSTVNH HESPNAFFED SINPETKLVT  420
FLSSYVNLLQ NKYKMEEDDD LESLSRSRVL VSKFPMEEQL SRLYTFKMFT KLQNELNATM  480
NCEVQLDDST SSIVVIDLAE SSGEMVNKKY EVVHCMETDR MECNCGLFQF SGIVCRHTLS  540
VLKCQHVFDI PPCYVLNRWR NDFKQLHALD NPWKDLVTSN HIERYDYVSL QCLRLVEIGA  600
SSDEKHQHAL KLIRDIRRTL LDDNLCRELE QKLTPSERAI NGDSHMQAGS SEGGPAKKRR  660
GRPPKKSKDT NVESVSNQYA HKDSLLVSSD VSQKDAFHSS STASNLGTHV RTNGVVDLME  720
EVNPNELSFD SRYGVQSSHP HHYGNQLHPS NTMQFGQTTS TAEHSRVQWM YQNIFQDDQV  780
PYGRRT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.173610.0callus| flower| leaf| panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329803880.0
Expression AtlasQ75LD4-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g62660.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g62660
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0703640.0AK070364.1 Oryza sativa Japonica Group cDNA clone:J023050I08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629688.10.0protein FAR1-RELATED SEQUENCE 6
RefseqXP_015629689.10.0protein FAR1-RELATED SEQUENCE 6
RefseqXP_015629690.10.0protein FAR1-RELATED SEQUENCE 6
TrEMBLQ75LD40.0Q75LD4_ORYSJ; Os03g0843700 protein
STRINGOS03T0843700-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP1388844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80010.11e-113FAR1-related sequence 8