PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os03g62470.1 | ||||||||
Common Name | OSJNBa0075M12.16 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | NAC | ||||||||
Protein Properties | Length: 132aa MW: 14594.4 Da PI: 9.5997 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 63.5 | 6.5e-20 | 8 | 124 | 1 | 109 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyat..gkrknr.atksgyWk 84 l pG+ F+P+d+ l++ +L++k+++ ++e + i+++d+y+++P +L ++++ + wyfF++ + ++++ + r++r + +++Wk LOC_Os03g62470.1 8 LEPGYAFRPSDDGLITLFLRPKIAKIPFEH-RLINHADVYSADPTELVGehrpapGTHGSGSVWYFFCSPRYTSKRkaSGRRQRaVGGESVWK 99 579************************999.89**************733567665556778******97655543113355552667999** PP NAM 85 atgkdkevlskkgelvglkktLvfy 109 + g +k+v+ ++g+ vg + + ++ LOC_Os03g62470.1 100 SEGGKKAVIGADGRRVGYLQKFSYH 124 *****************99999998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.35E-26 | 6 | 128 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 24.53 | 8 | 131 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.5E-11 | 10 | 126 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 132 aa Download sequence Send to blast |
MDDDEIALEP GYAFRPSDDG LITLFLRPKI AKIPFEHRLI NHADVYSADP TELVGEHRPA 60 PGTHGSGSVW YFFCSPRYTS KRKASGRRQR AVGGESVWKS EGGKKAVIGA DGRRVGYLQK 120 FSYHYTGQGH L* |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q6AVQ6 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os03g62470.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os03g62470 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC096856 | 0.0 | AC096856.7 Oryza sativa chromosome 3 BAC OSJNBa0075M12 genomic sequence, complete sequence. | |||
GenBank | AP014959 | 0.0 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015629679.1 | 4e-90 | NAC transcription factor NAM-2 | ||||
TrEMBL | Q6AVQ6 | 3e-92 | Q6AVQ6_ORYSJ; No apical meristem protein | ||||
STRING | ORGLA03G0372600.1 | 7e-80 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4363 | 21 | 58 | Representative plant | OGRP11899 | 2 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27410.2 | 6e-15 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os03g62470.1 |