PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os03g62379.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | MYB_related | ||||||||
Protein Properties | Length: 219aa MW: 25609.7 Da PI: 4.3996 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.1 | 4.6e-09 | 66 | 107 | 1 | 44 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 r +W++ E ++++++ +q+G++ ++ I + ++ ++++q++ ++ LOC_Os03g62379.1 66 RAKWSKSETDKFYEGLQQFGSD-FAMIQHLFP-DKSRNQVRQKF 107 569*******************.*********.********998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.64E-11 | 57 | 113 | IPR009057 | Homeodomain-like |
Pfam | PF15963 | 3.7E-26 | 59 | 140 | No hit | No description |
SMART | SM00717 | 7.5E-9 | 65 | 113 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.7E-6 | 66 | 108 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.35E-6 | 68 | 108 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MQAKPLGGCL DQTGTFRGNR LSTSQFGDMD DEYNEQDNWD NDRTENHVVE NTTKLNYHSY 60 MNRQTRAKWS KSETDKFYEG LQQFGSDFAM IQHLFPDKSR NQVRQKFKAE EKKHPMQVHD 120 AIMHRSRDNL YFKEVIKKLN IEDVQPDINN THEQEGTSNE EDPGNKNIPG GLINEEEENG 180 LDWSDKELDM HRSEVEEKEH VSTNDDDDDD LGDVFDWY* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.79004 | 0.0 | leaf |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q10AV1 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os03g62379.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os03g62379 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC096856 | 2e-92 | AC096856.7 Oryza sativa chromosome 3 BAC OSJNBa0075M12 genomic sequence, complete sequence. | |||
GenBank | AP014959 | 2e-92 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015633004.1 | 1e-140 | uncharacterized protein LOC9267825 | ||||
TrEMBL | Q10AV1 | 1e-161 | Q10AV1_ORYSJ; Myb-like DNA-binding domain containing protein, expressed | ||||
STRING | ORUFI03G42160.1 | 1e-133 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2595 | 29 | 46 | Representative plant | OGRP10105 | 3 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39160.1 | 5e-31 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os03g62379.1 |