PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g61570.2
Common NameLOC4334668, Os03g0831200, OsJ_13227, OSJNBa0078D06.18, OSJNBb0027B08.10, OSNPB_030831200
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GATA
Protein Properties Length: 137aa    MW: 15096.3 Da    PI: 10.5127
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g61570.2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA64.71.1e-202761135
              GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                      C+ C+ttkTplWR gp+g+k+LCnaCG++yrkk++
  LOC_Os03g61570.2 27 CTDCHTTKTPLWRGGPSGPKSLCNACGIRYRKKRR 61
                      ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577162.0E-142060No hitNo description
SMARTSM004016.9E-182181IPR000679Zinc finger, GATA-type
PROSITE profilePS5011413.312157IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.2E-162561IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.47E-152661No hitNo description
PROSITE patternPS0034402752IPR000679Zinc finger, GATA-type
PfamPF003202.0E-182761IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009009anatomyplant embryo
PO:0001081developmental stagemature plant embryo stage
PO:0007042developmental stagewhole plant fruit formation stage
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MDSSSVEKGS GSIDPDERTA SGEPKACTDC HTTKTPLWRG GPSGPKSLCN ACGIRYRKKR  60
REALGLDAGE GGAERQEKKK SKRERGEEVT MELRMVGFGK EVVLKQRRRM RRRRRLGEEE  120
KAAILLMALS SGVIYA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105111QRRRMRR
2107112RRMRRR
3107114RRMRRRRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.162971e-154callus| flower| leaf| panicle| root| seed
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329740541e-154
Expression AtlasQ850Z5-
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g61570.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g61570
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0737090.0AK073709.1 Oryza sativa Japonica Group cDNA clone:J033058P14, full insert sequence.
GenBankCT8319410.0CT831941.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA112C03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631979.12e-93GATA transcription factor 16
SwissprotQ9FJ102e-29GAT16_ARATH; GATA transcription factor 16
TrEMBLA0A0D3FQY46e-92A0A0D3FQY4_9ORYZ; Uncharacterized protein
TrEMBLA0A0D9ZFB66e-92A0A0D9ZFB6_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0GVZ06e-92A0A0E0GVZ0_ORYNI; Uncharacterized protein
TrEMBLA0A0E0P3H06e-92A0A0E0P3H0_ORYRU; Uncharacterized protein
TrEMBLA2XNM36e-92A2XNM3_ORYSI; Uncharacterized protein
TrEMBLQ850Z56e-92Q850Z5_ORYSJ; Expressed protein
STRINGOGLUM03G39650.19e-93(Oryza glumipatula)
STRINGORUFI03G41540.19e-93(Oryza rufipogon)
STRINGOS03T0831200-019e-93(Oryza sativa)
STRINGONIVA03G41600.19e-93(Oryza nivara)
STRINGOBART03G39750.19e-93(Oryza barthii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.16e-27GATA transcription factor 15
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  2. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]