PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os03g61249.1 | ||||||||
Common Name | LOC107280343, LOC107280344, OsJ_13208, OSJNBa0010E04.16, OSJNBa0010E04.21 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | NAC | ||||||||
Protein Properties | Length: 317aa MW: 33994.6 Da PI: 4.429 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 64 | 4.5e-20 | 9 | 154 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkya..tgkrknratk.....s 80 l pG+ FhP+d+ l++ +L++++++ ++e + i+++d+y+++P +L ++++++ wyfF++ + +++ t+ r++ra+ + LOC_Os03g61249.1 9 LEPGYVFHPSDDGLITLFLRPSIAKIPFED-RLINHADVYSANPAELVGehrpapGTHGSSSVWYFFCSPRFTSKrkTSGRRQRAVGgggggE 100 579************************998.88**************7335666655557779*****9875544115567777654444447 PP NAM 81 gyWkatgkdkevlskkgelvglkktLvfy......kgrapkgektdWvmheyrl 128 ++Wk+ g +k+v+ ++g+ vg + + + +g+a++ ++ W+m ey l LOC_Os03g61249.1 101 SVWKSEGGKKAVIGADGRRVGYLQKFSYGvyesssSGSARTFTRLGWCMTEYGL 154 78********************99999966677766889999999*******76 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.06E-32 | 7 | 173 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 28.977 | 9 | 173 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.3E-12 | 11 | 153 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 317 aa Download sequence Send to blast |
MADDDEIALE PGYVFHPSDD GLITLFLRPS IAKIPFEDRL INHADVYSAN PAELVGEHRP 60 APGTHGSSSV WYFFCSPRFT SKRKTSGRRQ RAVGGGGGGE SVWKSEGGKK AVIGADGRRV 120 GYLQKFSYGV YESSSSGSAR TFTRLGWCMT EYGLDDDAID GADKQVLCKV YRSPRAVCAE 180 ARTAAAAKSA DSPCSGSKRK ADDGADHPEA PPSARPRQEE AGSEQPAILP ELDLDALLSA 240 PMDDSLGVEF DTATTEQYMR YLMNDEPLPW APTMEVAGGG DEFIETTNGP CMGEEEIIQR 300 LASGETLDDI LGSNPN* |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q8RV35 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os03g61249.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os03g61249 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC096687 | 0.0 | AC096687.5 Oryza sativa chromosome 3 BAC OSJNBa0010E04 genomic sequence, complete sequence. | |||
GenBank | AP014959 | 0.0 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015629669.1 | 0.0 | NAC domain-containing protein 71-like | ||||
Refseq | XP_015629670.1 | 0.0 | NAC domain-containing protein 71-like | ||||
TrEMBL | Q8RV35 | 0.0 | Q8RV35_ORYSJ; No apical meristem protein | ||||
STRING | ORGLA03G0364100.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4363 | 21 | 58 | Representative plant | OGRP11899 | 2 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27410.2 | 4e-09 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os03g61249.1 |
Entrez Gene | 107280343 | 107280344 |