PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os03g60630.1 | ||||||||
Common Name | OJ1754_E06.26 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | Dof | ||||||||
Protein Properties | Length: 356aa MW: 35104 Da PI: 9.7068 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 123.2 | 8.8e-39 | 55 | 115 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e lkcprC+stntkfCy+nnyslsqPr+fCk+CrryWt+GGalrnvPvGgg+r+nk+++ LOC_Os03g60630.1 55 PEPGLKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRTK 115 56789*****************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 3.0E-37 | 42 | 113 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.3E-32 | 59 | 113 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.609 | 59 | 113 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 61 | 97 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 356 aa Download sequence Send to blast |
MPPHHGGLMA PRPDMVAAAV AASGGGGGGG GPTGGTAVRP GSMTERARLA KIPQPEPGLK 60 CPRCESTNTK FCYFNNYSLS QPRHFCKTCR RYWTRGGALR NVPVGGGCRR NKRTKSSKSS 120 SSTSAAGSAS ATGGTSSSTS STATGGSSSA AAAAAMMPPQ AQLPFLASLH HPLGGGDHYS 180 SGASRLGFPG LSSLDPVDYQ LGGGAAAAAA IGLEQWRLPQ IQQFPFLSRN DAMPPPMSGI 240 YPFDAEAAAD AAGFAGQLLA GTKVPGSSGL ITQLASVKME DSNAQSAAMN SSPREFLGLP 300 GNLQFWGGGN GAGPGGNGDG ATGGSGAGVA PGGGGSGGGW ADLSGFNSSS SGNIL* |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q84T97 |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00483 | DAP | Transfer from AT5G02460 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os03g60630.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os03g60630 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC104433 | 0.0 | AC104433.8 Oryza sativa chromosome 3 BAC OJ1754_E06 genomic sequence, complete sequence. | |||
GenBank | AP014959 | 0.0 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015628806.1 | 0.0 | dof zinc finger protein DOF2.4 isoform X1 | ||||
Refseq | XP_015628807.1 | 0.0 | dof zinc finger protein DOF2.4 isoform X2 | ||||
TrEMBL | Q84T97 | 0.0 | Q84T97_ORYSJ; Dof domain, zinc finger family protein, expressed | ||||
STRING | OS03T0821200-00 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4893 | 29 | 61 | Representative plant | OGRP38 | 17 | 445 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G55370.1 | 3e-41 | OBF-binding protein 3 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os03g60630.1 |