PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g59460.1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bZIP
Protein Properties Length: 330aa    MW: 35233.5 Da    PI: 5.31
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g59460.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1315.4e-10200226127
                       XXXXCHHHCHHHHHHHHHHHHHHHHHH CS
            bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkae 27 
                       e+elkrerrkq+NRe+ArrsR+RK+++
  LOC_Os03g59460.1 200 ERELKRERRKQSNRESARRSRLRKQER 226
                       89***********************97 PP
2bZIP_126.11.8e-082462832663
                       HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1  26 aeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                       +e+eeL +kv eL+a N++L  el++lkk ++ +++e+
  LOC_Os03g59460.1 246 QECEELSQKVTELTAVNSTLMTELDKLKKDCEDMEAEN 283
                       89********************************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.6E-16193281No hitNo description
SMARTSM003382.4E-15200285IPR004827Basic-leucine zipper domain
PfamPF001701.6E-7200226IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.06E-5204228No hitNo description
CDDcd147025.41E-13205276No hitNo description
PROSITE patternPS000360207222IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MASSAASPSS SKSDDERRQD GDRDTRDPAA SSSAAAAAAQ THAEWAASMQ AYYAAAAAAA  60
GGHPYAWPPP QSVPPMAGCA VPSAAAEGKS KRKTSGGPSG EDSSGSGDGG SEDSSERRDD  120
ADEKGLSPAK WRKLGHPDIE GETSQAAAMS EQNPVKAAPN LNIGMDIWSN STMAAMPSGQ  180
VEVNAGTHLR RDKALSQMDE RELKRERRKQ SNRESARRSR LRKQERPTSF CHPPNYPVTF  240
YGLTNQECEE LSQKVTELTA VNSTLMTELD KLKKDCEDME AENSQLMDEM VQSEGSSVIA  300
TLSVKIDTSK DRHGSSSQLN KHTNDDSKG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1216222RRSRLRK
2216223RRSRLRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.541631e-142callus| flower| panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329874591e-142
Expression AtlasQ10BP4-
Functional Description ? help Back to Top
Source Description
UniProtInteracts specifically with the 8-bp sequence 5'-CACGTGGC-3'in the abscisic acid response element (ABARE). Also binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g59460.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g59460
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1022501e-140AK102250.1 Oryza sativa Japonica Group cDNA clone:J033088G19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025879816.11e-177DNA-binding protein EMBP-1 isoform X5
SwissprotP250323e-42EMBP1_WHEAT; DNA-binding protein EMBP-1
TrEMBLQ10BP40.0Q10BP4_ORYSJ; BZIP transcription factor family protein
STRINGORUFI03G39940.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21603692
Representative plantOGRP7001767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36730.25e-25G-box binding factor 1