PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g58830.1
Common NameLOC4334471, Os03g0802900, OSJNBa0087C10.10, OSNPB_030802900
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 266aa    MW: 28017.8 Da    PI: 6.9662
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g58830.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.73.3e-11146193455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+ +Er RR++i +++  L++l+P +    +k   Ka++L + ++YI+ Lq
  LOC_Os03g58830.1 146 SHSLAERARREKISERMKILQDLVPGC----NKVIGKASVLDEIINYIQALQ 193
                       8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.45E-18140209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.80E-10140197No hitNo description
Gene3DG3DSA:4.10.280.102.0E-18142210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.221142192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-8146193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-11148198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048446Biological Processpetal morphogenesis
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009030anatomycarpel
PO:0007130developmental stagesporophyte reproductive stage
PO:0007606developmental stagegynoecium development stage
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MDPAPTLAAE LWRTPYLGGG GGGGGGGRGL EAAASGVTEQ SNGSRGGGGG GGAGRRRQRE  60
APALEDDSSR IVSTSGGGGG GQDLTDSEAK RFKASKSSGD NSSLRTEAET DSRNASKSGD  120
QNPPPPEPPK QDYIHVRARR GQATDSHSLA ERARREKISE RMKILQDLVP GCNKVIGKAS  180
VLDEIINYIQ ALQRQVEFLS MKLEAVNAHV NNGIEAFPPK DFGAQVYNTA PGLTFDPQTP  240
REYAQGSTPS EWLHMQIGGT YERVT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.335440.0flower| panicle| seed
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329480640.0
Expression AtlasQ84T08-
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may regulate jasmonate-regulated genes. {ECO:0000250|UniProtKB:Q69WS3}.
Function -- GeneRIF ? help Back to Top
  1. Results indicate that RICE SALT SENSITIVE3 (RSS3) can specifically interact with bHLH094 (Os07g0193800) and bHLH089 (Os03g0802900).
    [PMID: 23715469]
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00207DAPTransfer from AT1G59640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g58830.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g58830
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1001770.0AK100177.1 Oryza sativa Japonica Group cDNA clone:J023029J10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629323.10.0transcription factor BHLH089-like
SwissprotQ84T080.0BH089_ORYSJ; Transcription factor BHLH089
TrEMBLA0A0D3FQB90.0A0A0D3FQB9_9ORYZ; Uncharacterized protein
TrEMBLI1PGF20.0I1PGF2_ORYGL; Uncharacterized protein
STRINGOS03T0802900-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30653577
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.11e-71BIG PETAL P
Publications ? help Back to Top
  1. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]
  2. Toda Y, et al.
    RICE SALT SENSITIVE3 forms a ternary complex with JAZ and class-C bHLH factors and regulates jasmonate-induced gene expression and root cell elongation.
    Plant Cell, 2013. 25(5): p. 1709-25
    [PMID:23715469]