PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g58420.2
Common NameLOC4334437, Os03g0798500, WRKY6
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 381aa    MW: 39851 Da    PI: 9.9356
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g58420.2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY971.3e-30305363259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       +D y+WrKYGqK++kgs++pr+YYrC+s+ +Cp++k+ver+++dp ++ +tYe+eHnh 
  LOC_Os03g58420.2 305 SDNYSWRKYGQKPIKGSPHPRGYYRCSSKkDCPARKHVERCRSDPAMLLVTYENEHNHA 363
                       69**************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105335.6E-13263302IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.0E-32296365IPR003657WRKY domain
PROSITE profilePS5081131.031299365IPR003657WRKY domain
SuperFamilySSF1182906.67E-27302365IPR003657WRKY domain
SMARTSM007742.7E-37304364IPR003657WRKY domain
PfamPF031061.9E-26306362IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MDGVEEANMA AVESSKKLVA ILSKSGDPFR LMAAVAETDE AVSRFGKVVT ILSNRVGHAR  60
ARLGKRRSSP PVDPGCLMDH PLAAAASSPA PSNGRLHFSS SAATASPSPA TAAAASSAAN  120
VTPAVVDRSL FLETTLLDLN SRGAPAPAAS MAAAAKNSSK LAPAPMVNSS SSANHIQFQQ  180
PMKSFQFEQT PISDKFHIEM PRGVGGGGGK EVISFSFDNS VCTSSAATSF FTSISSQLIS  240
MSDAATNSAA AAAAPTTKKP SSCARKATAD DDAGGKCHCP KKKKPREKKV VTVPAISDKV  300
ADIPSDNYSW RKYGQKPIKG SPHPRGYYRC SSKKDCPARK HVERCRSDPA MLLVTYENEH  360
NHAQPLDLSV VQQATANPQT *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-203023651274WRKY transcription factor 1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1166380490.0
Expression AtlasQ6IES5-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g58420.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g58420
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0937130.0AC093713.6 Oryza sativa chromosome 3 BAC OSJNBa0094F01 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629206.10.0protein WRKY1 isoform X2
TrEMBLA0A0E0P2K70.0A0A0E0P2K7_ORYRU; Uncharacterized protein
TrEMBLQ6IES50.0Q6IES5_ORYSJ; Os03g0798500 protein
STRINGORUFI03G39090.10.0(Oryza rufipogon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31550.14e-38WRKY DNA-binding protein 11
Publications ? help Back to Top
  1. Zhang ZL, et al.
    A rice WRKY gene encodes a transcriptional repressor of the gibberellin signaling pathway in aleurone cells.
    Plant Physiol., 2004. 134(4): p. 1500-13
    [PMID:15047897]