PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g58330.1
Common NameLOC4334429, Os03g0797600, OSJNBa0094F01.11, OSNPB_030797600
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 295aa    MW: 31263.2 Da    PI: 5.8095
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g58330.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH261.7e-08144188554
                       HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       h+++Er RR+ri +++  L+el+P+       K + a++L +  +Y+k L
  LOC_Os03g58330.1 144 HSIAERLRRERIAERMRALQELVPNT-----NKTDRAAMLDEILDYVKFL 188
                       99***********************7.....5***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.15E-15137198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.97E-10137193No hitNo description
PROSITE profilePS5088815.77139188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-14141199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.9E-6144188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-9145194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0031347Biological Processregulation of defense response
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020039anatomyleaf lamina
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MAGQQPQQQG PPEDDFFDQF FSLTSSFPGA APGGRAAGDQ PFSLALSLDA AAAAEASGSG  60
KRLGVGDDAE GGGSKADRET VQLTGLFPPV FGGGGVQPPN LRPTPPTQVF HPQQSKQGGA  120
AVGPQPPAPR PKVRARRGQA TDPHSIAERL RRERIAERMR ALQELVPNTN KTDRAAMLDE  180
ILDYVKFLRL QVKVLSMSRL GGAGAVAQLV ADIPLSVKGE ASDSGGNQQI WEKWSTDGTE  240
RQVAKLMEED IGAAMQFLQS KALCMMPISL AMAIYDTQQT QDGQPVKHEP NTPS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1148153RLRRER
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.275220.0leaf| panicle| stem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ7Y1H4
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00659PBMTransfer from Pp3c14_15890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g58330.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g58330
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1044120.0AK104412.1 Oryza sativa Japonica Group cDNA clone:006-203-H10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633087.10.0transcription factor UNE12 isoform X1
SwissprotO227682e-74UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A0D9ZEF50.0A0A0D9ZEF5_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0D8760.0A0A0E0D876_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0GUY70.0A0A0E0GUY7_ORYNI; Uncharacterized protein
TrEMBLB8ALB20.0B8ALB2_ORYSI; Uncharacterized protein
TrEMBLI1Q5N60.0I1Q5N6_ORYGL; Uncharacterized protein
TrEMBLQ7Y1H40.0Q7Y1H4_ORYSJ; Lipoamide dehydrogenase, putative, expressed
STRINGOGLUM03G37150.10.0(Oryza glumipatula)
STRINGOS03T0797600-010.0(Oryza sativa)
STRINGORGLA06G0244900.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26563580
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.35e-54bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]