PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g58250.1
Common NameLOC4334424, Os03g0796900, OSJNBa0094F01.19, OSNPB_030796900
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bZIP
Protein Properties Length: 426aa    MW: 44252.9 Da    PI: 4.8606
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g58250.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1422e-13234286557
                       CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 
                       + +rrkq+NRe+ArrsR RK a + eLe  v +L  eN++L  +l   ++++ 
  LOC_Os03g58250.1 234 RLQRRKQSNRESARRSRSRKAAHLNELEAQVSQLRVENSSLLRRLADVNQKYN 286
                       789***************************************99988888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.2E-17230294IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.392232286IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1703.3E-10232286No hitNo description
SuperFamilySSF579591.31E-9234284No hitNo description
PfamPF001701.2E-10234285IPR004827Basic-leucine zipper domain
PfamPF124981.2E-52301418IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009066anatomyanther
PO:0001004developmental stageanther development stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MERVFSVEEI SDPFWVPPPP PQSAAAAQQQ GGGGVASGGG GGVAGGGGGG NAMNRCPSEW  60
YFQKFLEEAV LDSPVPNPSP RAEAGGIRGA GGVVPVDVKQ PQLSAAAAAA ATTSAVVDPV  120
EYNAMLKQKL EKDLAAVAMW RASGTVPPER PGAGSSLLNA DVSHIGAPNS IGGNATPVQN  180
MLSGPSGGSG SQLVQNVDVL VKQPTSSSSR EQSDDDDMEG EAETTGTARP ADQRLQRRKQ  240
SNRESARRSR SRKAAHLNEL EAQVSQLRVE NSSLLRRLAD VNQKYNDAAV DNRVLKADVE  300
TLRAKVKMAE DSVKRVTGMN ALFPAASDMS SLSMPFNSSP SEATSDAAVP IQDDPNNYFA  360
TNNDIGGNNN YMPDIPSSAQ EDEDFVNGAL AAGKIGRTAS LQRVASLEHL QKRMCGGPAS  420
SGSTS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.1360.0callus| leaf| panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329786060.0
Expression AtlasQ7X9A8-
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in developing seeds from 5 to 30 days after flowering (DAF). {ECO:0000269|PubMed:11133985}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the DNA specific sequence 5'-GCCACGT[AC]AG-3' found in the alpha-globulin gene promoter (PubMed:9049271, PubMed:11572990). Does not bind to promoters of other major storage genes such as glutelin, prolamin and albumin (PubMed:9049271). Binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). {ECO:0000269|PubMed:11133985, ECO:0000269|PubMed:11572990, ECO:0000269|PubMed:9049271}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00040PBMTransfer from AT5G28770Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g58250.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g58250
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0685890.0AK068589.1 Oryza sativa Japonica Group cDNA clone:J013153H07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631619.10.0bZIP transcription factor RISBZ2-like
SwissprotQ7X9A80.0RSBZ2_ORYSJ; bZIP transcription factor RISBZ2
TrEMBLQ10C280.0Q10C28_ORYSJ; BZIP transcription factor family protein, expressed
STRINGOS03T0796900-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34883878
Representative plantOGRP18391639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28770.21e-34bZIP family protein
Publications ? help Back to Top
  1. Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F
    A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif.
    J. Biol. Chem., 2001. 276(17): p. 14139-52
    [PMID:11133985]
  2. Yang D,Wu L,Hwang YS,Chen L,Huang N
    Expression of the REB transcriptional activator in rice grains improves the yield of recombinant proteins whose genes are controlled by a Reb-responsive promoter.
    Proc. Natl. Acad. Sci. U.S.A., 2001. 98(20): p. 11438-43
    [PMID:11572990]
  3. Cheng S,Wang Z,Hong M
    Rice bZIP protein, REB, interacts with GCN4 motif in promoter of Waxy gene.
    Sci. China, C, Life Sci., 2002. 45(4): p. 352-60
    [PMID:18759022]
  4. Nakase M,Aoki N,Matsuda T,Adachi T
    Characterization of a novel rice bZIP protein which binds to the alpha-globulin promoter.
    Plant Mol. Biol., 1997. 33(3): p. 513-22
    [PMID:9049271]