PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os03g58160.1 | ||||||||
Common Name | HSF12, HSFA2E, LOC4334418, Os03g0795900, OsJ_012388, OSJNBb0021G19.9 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | HSF | ||||||||
Protein Properties | Length: 358aa MW: 40258.9 Da PI: 5.8292 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 115 | 4.7e-36 | 39 | 130 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 Fl+k+y++++d++++ ++sws+++nsfvv+d++ f + +Lp+yFkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+k+ll LOC_Os03g58160.1 39 FLTKTYDMVDDPTTDAVVSWSATNNSFVVWDPHLFGNVLLPRYFKHNNFSSFVRQLNTYGFRKVDPDK---------WEFANEGFLRGQKHLL 122 9********************999*****************************************999.........**************** PP XXXXXXXX CS HSF_DNA-bind 95 ekikrkks 102 ++ikr+k LOC_Os03g58160.1 123 KSIKRRKP 130 *****985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 1.18E-35 | 35 | 128 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 4.1E-62 | 35 | 128 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 4.1E-39 | 35 | 128 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 2.4E-20 | 39 | 62 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 4.3E-32 | 39 | 128 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.4E-20 | 77 | 89 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 78 | 102 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.4E-20 | 90 | 102 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020039 | anatomy | leaf lamina |
Sequence ? help Back to Top |
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Protein Sequence Length: 358 aa Download sequence Send to blast |
MNYRVVNPVK VESGPSTGVA NGQPPRPMDG LADGGPPPFL TKTYDMVDDP TTDAVVSWSA 60 TNNSFVVWDP HLFGNVLLPR YFKHNNFSSF VRQLNTYGFR KVDPDKWEFA NEGFLRGQKH 120 LLKSIKRRKP PNSSPSQQSL GSFLEVGHFG YEGEIDQLKR DKHLLMAEVV KLRQEQQNTK 180 SDLQAMEQKL QGTEQKQQHM MAFLSRVMHN PEFIRQLFSQ SEMRKELEEF VSKKRRRRID 240 QGPELDSMGT GSSPEQVSQV MFEPHDPVDS LFNGVPSDLE SSSVEANGGK AQQDVASSSS 300 EHGKIKPSNG ELNEDFWEDL LHEGGLDEDT RNPAIDDMNL LSQKMGYLNS SSTKSPQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 5e-27 | 16 | 128 | 4 | 129 | Heat shock factor protein 1 |
5d5v_B | 5e-27 | 16 | 128 | 4 | 129 | Heat shock factor protein 1 |
5d5v_D | 5e-27 | 16 | 128 | 4 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 121 | 127 | LKSIKRR |
2 | 232 | 237 | KKRRRR |
3 | 233 | 238 | KRRRRI |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.5364 | 0.0 | callus| flower| leaf| panicle| root| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 116639002 | 0.0 | ||||
Expression Atlas | Q6F388 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator expressed upon environmental stress that specifically binds DNA of heat shock promoter elements (HSE). Involved in heat stress response. {ECO:0000269|PubMed:18064488}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os03g58160.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat stress. {ECO:0000269|PubMed:18064488}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os03g58160 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK068660 | 0.0 | AK068660.1 Oryza sativa Japonica Group cDNA clone:J013162K14, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015630486.1 | 0.0 | heat stress transcription factor A-2e | ||||
Swissprot | Q6F388 | 0.0 | HFA2E_ORYSJ; Heat stress transcription factor A-2e | ||||
TrEMBL | A0A0D3FQ53 | 0.0 | A0A0D3FQ53_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0D9ZED7 | 0.0 | A0A0D9ZED7_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0GUW7 | 0.0 | A0A0E0GUW7_ORYNI; Uncharacterized protein | ||||
STRING | OS03T0795900-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP308 | 37 | 231 | Representative plant | OGRP96 | 17 | 233 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22830.1 | 1e-106 | heat shock transcription factor A6B |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os03g58160.1 |
Entrez Gene | 4334418 |
Publications ? help Back to Top | |||
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