PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os03g57670.1 | ||||||||
Common Name | OsJ_12898, OSJNBa0087O09.18 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | LBD | ||||||||
Protein Properties | Length: 172aa MW: 18322.4 Da PI: 7.7749 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 117.7 | 7.1e-37 | 21 | 121 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +CaaCk+lrr+C++dCvlap+fpa++p+++a+v+++FGa n ++l++lp +er +a++s++ eA r++dPvyG++gvi++lq q++ ++ e LOC_Os03g57670.1 21 RCAACKFLRRRCSRDCVLAPHFPASDPHRYACVQRVFGAGNTARMLQQLPVQERGRAADSMAAEAYRRVQDPVYGCAGVINRLQDQIRAAQCE 113 6******************************************************************************************** PP DUF260 94 lallkeel 101 la +++++ LOC_Os03g57670.1 114 LAWTHAQI 121 ***99885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.763 | 20 | 121 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.9E-35 | 21 | 117 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MSPGEEDVEA SSDSGGSATR RCAACKFLRR RCSRDCVLAP HFPASDPHRY ACVQRVFGAG 60 NTARMLQQLP VQERGRAADS MAAEAYRRVQ DPVYGCAGVI NRLQDQIRAA QCELAWTHAQ 120 IAMHSAAAAH ARTTLPPGQR DGGGGGAPST QQATTSAAWQ LEDFASEFSF P* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 8e-31 | 22 | 125 | 12 | 115 | LOB family transfactor Ramosa2.1 |
5ly0_B | 8e-31 | 22 | 125 | 12 | 115 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q852M3 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os03g57670.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os03g57670 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC087096 | 1e-178 | AC087096.11 Oryza sativa chromosome 3 BAC OSJNBa0087O09 genomic sequence, complete sequence. | |||
GenBank | AP014959 | 1e-178 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012611 | 1e-178 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015690105.1 | 2e-67 | PREDICTED: LOB domain-containing protein 24-like | ||||
Swissprot | P59468 | 1e-41 | LBD24_ARATH; LOB domain-containing protein 24 | ||||
TrEMBL | A2XMS1 | 1e-121 | A2XMS1_ORYSI; Uncharacterized protein | ||||
TrEMBL | Q852M3 | 1e-121 | Q852M3_ORYSJ; LOB domain protein 4, putative | ||||
STRING | OPUNC03G33890.1 | 1e-101 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5282 | 35 | 62 | Representative plant | OGRP60 | 16 | 318 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26660.1 | 6e-41 | LOB domain-containing protein 24 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os03g57670.1 |