PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g57190.1
Common NameLOC4334346, Os03g0785800, PCF6
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family TCP
Protein Properties Length: 358aa    MW: 36356.1 Da    PI: 8.6888
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g57190.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP118.11.1e-36491631105
               TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...........ssssasec....eaess 78 
                       a+g+kdrhsk++T++g RdRRvRls+ +a++f+dLqd+LGfd++sk+ieWL+++a pai+ l+++                  +    +  +s
  LOC_Os03g57190.1  49 ATGGKDRHSKVYTAKGIRDRRVRLSVATAIQFYDLQDRLGFDQPSKAIEWLINAASPAIDTLPSLdpaafaaiphaA------AdaapTRRRS 135
                       5899*************************************************************888886554321......1222323333 PP

               TCP  79 sssasnsssgkaaksaa.kskksqksaa 105
                       ++++++ s+++ ++s+  +sk s+k+ +
  LOC_Os03g57190.1 136 QQQQQQLSNKSGCSSTSeTSKGSDKEVT 163
                       3333333333333333323333333333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.8E-3551159IPR005333Transcription factor, TCP
PROSITE profilePS5136932.60752110IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007275Biological Processmulticellular organism development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009072anatomyplant ovary
PO:0007042developmental stagewhole plant fruit formation stage
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MEAAVGDGEG GGGGGGRGKR GRGGGGGEMV EAVWGQTGST ASRIYRVRAT GGKDRHSKVY  60
TAKGIRDRRV RLSVATAIQF YDLQDRLGFD QPSKAIEWLI NAASPAIDTL PSLDPAAFAA  120
IPHAAADAAP TRRRSQQQQQ QLSNKSGCSS TSETSKGSDK EVTVASAPAQ AASFTELLIA  180
GVAASSAGGG AIGNGADCVG IAHPGKGGAE GASTYGFSAA SSFGDAPPIG MVPAPPFNFS  240
APGADMAAHY SLAQDQLAAP PPPAGGDYNL NFSMSSGFLG ANRGTLQSNS PSNMSGHHHH  300
HHQQQLQRLD GSTISFLLGH AAAAAHPAAS EGQITSTAAL QLWDGFRHSG MKEKSKN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A8e-2657111155Putative transcription factor PCF6
5zkt_B8e-2657111155Putative transcription factor PCF6
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.198440.0flower| leaf
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1160121530.0
Expression AtlasQ10CE8-
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g57190.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g57190
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1333400.0AC133340.4 Oryza sativa chromosome 3 BAC clone OSJNBb0024J17, complete sequence.
GenBankAK2427880.0AK242788.1 Oryza sativa Japonica Group cDNA, clone: J090057A17, full insert sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629084.10.0transcription factor PCF6
SwissprotQ10CE80.0PCF6_ORYSJ; Transcription factor PCF6
TrEMBLA0A0E0P2790.0A0A0E0P279_ORYRU; Uncharacterized protein
STRINGOS03T0785800-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30943271
Representative plantOGRP18015163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.22e-34TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2
Publications ? help Back to Top
  1. Kosugi S,Ohashi Y
    DNA binding and dimerization specificity and potential targets for the TCP protein family.
    Plant J., 2002. 30(3): p. 337-48
    [PMID:12000681]