PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g56580.1
Common NameLOC4334294, Os03g0777000, OsJ_12786, OSJNBa0010I09.1, OSJNBa0070N04.8, OSNPB_030777000
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 363aa    MW: 40558.6 Da    PI: 6.8387
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g56580.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM163.67e-51391702128
               NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                        pGfrFhPtdeelv++yL++kv++k+l++ e+ike+diyk++PwdLp +++ ++ekewyfF+ r +ky+++ r+nr+t sg+Wkatg d++++
  LOC_Os03g56580.1  39 LPGFRFHPTDEELVTFYLRRKVARKSLSI-EIIKEMDIYKHDPWDLPnASTVGGEKEWYFFCLRGRKYRNSIRPNRVTGSGFWKATGIDRPIY 130
                       69***************************.89***************556666899************************************* PP

               NAM  94 sk.....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       s+     +ge +glkk+Lv+y+g+a kg+ktdW+mhe+rl
  LOC_Os03g56580.1 131 SAavnsnSGESIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 170
                       *9888888888***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.15E-5538197IPR003441NAC domain
PROSITE profilePS5100554.75938197IPR003441NAC domain
PfamPF023657.9E-2540170IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005992Biological Processtrehalose biosynthetic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006561Biological Processproline biosynthetic process
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010120Biological Processcamalexin biosynthetic process
GO:0042538Biological Processhyperosmotic salinity response
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MVTSKEFARD QAAMDQKIKS DVGEVVLAGD EEEDGDVVLP GFRFHPTDEE LVTFYLRRKV  60
ARKSLSIEII KEMDIYKHDP WDLPNASTVG GEKEWYFFCL RGRKYRNSIR PNRVTGSGFW  120
KATGIDRPIY SAAVNSNSGE SIGLKKSLVY YRGSAGKGTK TDWMMHEFRL PPAIAAADAS  180
PCMQEAEVWT ICRIFKRSIT YRKQQQQQAW RPPATVTVKA PPPGDSSSNT GSFESDGGGD  240
EFMNCGLTPA ISQQQQHGGR HQMMSTMSCN GGYFFNDGIH HSHSHHKLHS QWGSLQMAPP  300
EPKPEPEQKP LSSPAMTIAF HQNDHGFPAA AADFYKDGYL EEIARMMEVA DPSPTGFYDC  360
RY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-494020319171NO APICAL MERISTEM PROTEIN
1ut4_B7e-494020319171NO APICAL MERISTEM PROTEIN
1ut7_A7e-494020319171NO APICAL MERISTEM PROTEIN
1ut7_B7e-494020319171NO APICAL MERISTEM PROTEIN
3swm_A9e-494020322174NAC domain-containing protein 19
3swm_B9e-494020322174NAC domain-containing protein 19
3swm_C9e-494020322174NAC domain-containing protein 19
3swm_D9e-494020322174NAC domain-containing protein 19
3swp_A9e-494020322174NAC domain-containing protein 19
3swp_B9e-494020322174NAC domain-containing protein 19
3swp_C9e-494020322174NAC domain-containing protein 19
3swp_D9e-494020322174NAC domain-containing protein 19
4dul_A7e-494020319171NAC domain-containing protein 19
4dul_B7e-494020319171NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.170900.0callus| flower| leaf
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329835620.0
Expression AtlasQ8S7I7-
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, root caps, cotyledons, tips and margin of young leaves, senescent regions of fully expanded leaves and floral tissues, including old sepals, petals, staments, mature anthers and pollen grains. Not detected in the abscission zone of open flowers, emerging lateral roots and root meristematic zones. {ECO:0000269|PubMed:22345491}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00310DAPTransfer from AT2G43000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g56580.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g56580
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0735390.0AK073539.1 Oryza sativa Japonica Group cDNA clone:J033041C24, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628846.10.0transcription factor JUNGBRUNNEN 1
SwissprotQ9SK556e-83NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLQ8S7I70.0Q8S7I7_ORYSJ; NAC-domain containing protein 9, putative, expressed
STRINGOS03T0777000-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119138129
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.16e-84NAC domain containing protein 42
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]