PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os03g56140.2 | ||||||||
Common Name | LOC9271080, Os03g0772100, OsJ_012214, OSJNBb0094O03.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | TALE | ||||||||
Protein Properties | Length: 348aa MW: 37007.5 Da PI: 6.723 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 29.9 | 9.7e-10 | 252 | 289 | 18 | 55 |
HHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 18 lFeknrypsaeereeLAkklgLterqVkvWFqNrRake 55 ++ k +yps+ e+ LA+ +gL+++q+++WF N+R ++ LOC_Os03g56140.2 252 HYDKWPYPSEVEKMTLAQTTGLDQKQISNWFINQRKRH 289 68889******************************885 PP | |||||||
2 | ELK | 27 | 1e-09 | 208 | 229 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 +LKhqLl KY+g+Lg+L+q Fs LOC_Os03g56140.2 208 QLKHQLLMKYGGSLGDLRQAFS 229 59*****************776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 2.5E-20 | 79 | 123 | IPR005540 | KNOX1 |
Pfam | PF03790 | 1.4E-19 | 80 | 119 | IPR005540 | KNOX1 |
SMART | SM01188 | 4.7E-5 | 208 | 229 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 9.097 | 208 | 228 | IPR005539 | ELK domain |
Pfam | PF03789 | 3.3E-9 | 208 | 229 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.936 | 228 | 292 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 8.98E-16 | 230 | 298 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 4.5E-11 | 230 | 296 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.76E-13 | 231 | 292 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.9E-24 | 233 | 292 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.9E-15 | 248 | 288 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 267 | 290 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020048 | anatomy | microspore | ||||
PO:0001009 | developmental stage | D pollen mother cell meiosis stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 348 aa Download sequence Send to blast |
MESFASLAGG GSSSTTARLP ELIPPENPDR ISPPPLLYQL LAGSASSARH GHGHHHGGGG 60 GAAAAAVQGL QVSPAGAEAA MKAEIMSHPQ YSALLAAYLG CKKVGAPPDV LTKLTAVPAA 120 QQQLDAADGH PRRRHEPRRD DDVPDHQLDQ FMHADEVQGG AGAADPGSRG VLQLDSIADS 180 NCEGTGSSEE EQDTSCPEAE EIDPSDKQLK HQLLMKYGGS LGDLRQAFSK RTKKGKLPKE 240 ARLKLLHWWE LHYDKWPYPS EVEKMTLAQT TGLDQKQISN WFINQRKRHW KPTPVAGMTF 300 PTVEAAGGGF RHSGHDGGLA AAAAAAALPL YMGSWPFVVD GMYRLGS* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.60741 | 0.0 | panicle |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 297722584 | 0.0 | ||||
Expression Atlas | Q10EC6 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os03g56140.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os03g56140 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB028884 | 0.0 | AB028884.1 Oryza sativa mRNA for knotted1-type homeobox protein OSH43, complete cds. | |||
GenBank | AK107296 | 0.0 | AK107296.1 Oryza sativa Japonica Group cDNA clone:002-126-C04, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025879690.1 | 0.0 | homeobox protein knotted-1-like 9 | ||||
Swissprot | Q10EC6 | 0.0 | KNOS9_ORYSJ; Homeobox protein knotted-1-like 9 | ||||
TrEMBL | B9F5X5 | 0.0 | B9F5X5_ORYSJ; Uncharacterized protein | ||||
STRING | ORGLA03G0327300.1 | 0.0 | (Oryza glaberrima) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G08150.1 | 9e-52 | KNOTTED-like from Arabidopsis thaliana |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os03g56140.2 |
Entrez Gene | 9271080 |
Publications ? help Back to Top | |||
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