PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os03g56010.1 | ||||||||
Common Name | LOC4334255, Os03g0770000, OSNPB_030770000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bZIP | ||||||||
Protein Properties | Length: 166aa MW: 18478.8 Da PI: 11.2724 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 44.9 | 2.6e-14 | 65 | 114 | 1 | 50 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 e+e++r+rrk +NR++ArrsR+RK++++eeL+ +++ L aeN++L+ +l LOC_Os03g56010.1 65 EEERRRQRRKVSNRLSARRSRARKQQRLEELRGESARLRAENRELAARLH 114 7899*****************************************99886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 4.7E-10 | 61 | 115 | No hit | No description |
SMART | SM00338 | 1.0E-9 | 64 | 129 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.1E-9 | 65 | 114 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.887 | 67 | 118 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 2.03E-8 | 69 | 116 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 72 | 87 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009047 | anatomy | stem | ||||
PO:0007010 | developmental stage | whole plant fruit ripening stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 166 aa Download sequence Send to blast |
MLSVQEALDF DLDAMTSGFG FTPWAADTCP TLEQLMASSA SPSPSSSLDD NAAAAEEENG 60 EVEEEEERRR QRRKVSNRLS ARRSRARKQQ RLEELRGESA RLRAENRELA ARLHAVARHG 120 LAARCQNARL RAEAAALARR LLALQRLARG RHMMITASPP QFSRR* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 81 | 88 | RRSRARKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.86542 | 0.0 | leaf |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 115455600 | 0.0 | ||||
Expression Atlas | A0A0N7KI44 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os03g56010.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os03g56010 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC107207 | 0.0 | AC107207.9 Oryza sativa chromosome 3 BAC OSJNBb0106M04 genomic sequence, complete sequence. | |||
GenBank | AC133450 | 0.0 | AC133450.6 Oryza sativa chromosome 3 BAC OSJNBa0072F13 genomic sequence, complete sequence. | |||
GenBank | AP014959 | 0.0 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015630261.1 | 1e-112 | ocs element-binding factor 1 | ||||
TrEMBL | A0A0N7KI44 | 1e-110 | A0A0N7KI44_ORYSJ; Os03g0770000 protein | ||||
STRING | OS03T0770000-00 | 1e-111 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13845 | 24 | 29 | Representative plant | OGRP12644 | 4 | 5 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os03g56010.1 |
Entrez Gene | 4334255 |