PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os03g55990.1 | ||||||||
Common Name | Os03g0769800, OSJNBa0072F13.15, OSNPB_030769800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | HB-other | ||||||||
Protein Properties | Length: 243aa MW: 26689.5 Da PI: 9.6346 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 25.6 | 2.1e-08 | 170 | 220 | 5 | 50 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHH.HHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkkl....gLterq.VkvWFqN 50 +t+ q+e+Le++++++++p ++r++L +l +++ +q +kvWF LOC_Os03g55990.1 170 VHYTPGQVEALERVYAECPKPRFSRRQQLLCELsilaNIEPKQkIKVWFPK 220 679******************************99999987766*****65 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.4E-8 | 148 | 218 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.45E-6 | 154 | 222 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 2.48E-5 | 168 | 218 | No hit | No description |
Pfam | PF00046 | 4.8E-6 | 170 | 221 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0025281 | anatomy | pollen | ||||
PO:0001015 | developmental stage | K second mitotic division stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MPFPHGGVGP AACAGLPYVF PRRRVASPSS PPQLPNRSPL NSRPLLSTWN TMTVAAEVDA 60 SPDGEERRKQ ACNRTTIYRF LPSFSFFFLS FVSPSHMSGY FFSSSSPDDF TFARNLSGCC 120 CVEGGEGGNF GGGGGRSGGW RQRWRCPMRS GSGSDGSGYD KAGMDSGKYV HYTPGQVEAL 180 ERVYAECPKP RFSRRQQLLC ELSILANIEP KQKIKVWFPK QKVSKSMQGY TIKLVCLLCV 240 WL* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.91494 | 0.0 | callus| flower| leaf| panicle| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32985459 | 0.0 | ||||
Expression Atlas | Q6AU46 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os03g55990.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os03g55990 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC107207 | 0.0 | AC107207.9 Oryza sativa chromosome 3 BAC OSJNBb0106M04 genomic sequence, complete sequence. | |||
GenBank | AC133450 | 0.0 | AC133450.6 Oryza sativa chromosome 3 BAC OSJNBa0072F13 genomic sequence, complete sequence. | |||
GenBank | AK100250 | 0.0 | AK100250.1 Oryza sativa Japonica Group cDNA clone:J023060H19, full insert sequence. | |||
GenBank | AP014959 | 0.0 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015633127.1 | 1e-163 | homeobox-leucine zipper protein ROC4-like | ||||
TrEMBL | Q6AU46 | 1e-178 | Q6AU46_ORYSJ; Homeobox domain containing protein, expressed | ||||
STRING | OS03T0769800-01 | 1e-179 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP20296 | 4 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34710.1 | 1e-20 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os03g55990.1 |