PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os03g55590.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | G2-like | ||||||||
Protein Properties | Length: 199aa MW: 21779.9 Da PI: 10.2137 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 33.6 | 8.6e-11 | 146 | 170 | 1 | 25 |
G2-like 1 kprlrWtpeLHerFveaveqLGGse 25 k r++W+peLH++Fv a++qLGG++ LOC_Os03g55590.4 146 KSRRCWSPELHRQFVAALQQLGGPQ 170 68*********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.6E-8 | 144 | 170 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MNHSFPYLIY SVFDSYPCLI YTVFFMEVLI FIETGRCFRF QNDRRSGSTS PASRLLGGAE 60 ESSSRAVAPP PYFRREERVV LRPAMPLLPP ASHRSPPPAA AAAATAAGDD HRHVVASSFA 120 TAVPSPVPAA LSLQAQAQQQ QQQARKSRRC WSPELHRQFV AALQQLGGPQ GILHGRPSFS 180 PSIICKDHRK SSYLVVPP* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.25453 | 0.0 | callus| flower| leaf| panicle| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32990834 | 0.0 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os03g55590.4 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os03g55590 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC099043 | 0.0 | AC099043.6 Oryza sativa chromosome 3 BAC OSJNBa0079B15 genomic sequence, complete sequence. | |||
GenBank | AP014959 | 0.0 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015631206.1 | 2e-84 | transcription factor HHO5 | ||||
TrEMBL | A0A0D3FPG0 | 4e-83 | A0A0D3FPG0_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A3AMZ5 | 4e-84 | A3AMZ5_ORYSJ; Uncharacterized protein | ||||
STRING | OBART03G35220.1 | 7e-84 | (Oryza barthii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49560.1 | 2e-09 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os03g55590.4 |