PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LOC_Os03g55550.1 | ||||||||
Common Name | OsJ_12693, OSJNBa0002J24.23 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 311aa MW: 34267.3 Da PI: 7.8069 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32 | 2.3e-10 | 226 | 266 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 rrRR+riN ++ L++l+P+ +K++ +++Le+Av+Y+k Lq LOC_Os03g55550.1 226 RRRRERINGRLRILQKLVPNG-----TKVDISTMLEEAVHYVKFLQ 266 9******************97.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 5.63E-13 | 214 | 274 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.488 | 216 | 265 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.7E-11 | 220 | 270 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.4E-11 | 222 | 271 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.3E-7 | 226 | 266 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.86E-7 | 232 | 270 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 311 aa Download sequence Send to blast |
MAVDWIWERR RREEEYNHQM SQDELQQPGQ VQWTPAPEEK SEIAVQFFTA PYPCQNGQLD 60 HGEHHALGGI GACSSVHWQP DRGTCYWPPP LSGDGGGGSG SGSSGTGEGS YIGERCYYVG 120 EPDVPIGLNL LVGDNDGAGV VLRDAAPQAK RRTQAGHGGD LGRQKKKARV SDKRNQESMQ 180 SGSCSDNESN CSQVNRRKVD RVAGGGNGKV PARRRSATIA QSLYARRRRE RINGRLRILQ 240 KLVPNGTKVD ISTMLEEAVH YVKFLQLQIK VEVQIVCHDQ MLSSDELWMY APIVYNGMDL 300 GIDLNISPPR * |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 7 | 12 | ERRRRE |
2 | 212 | 228 | RRRSATIAQSLYARRRR |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
Expression Atlas | Q8W5G3 |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LOC_Os03g55550.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
RiceGE | Os03g55550 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC090713 | 0.0 | AC090713.6 Oryza sativa chromosome 3 BAC OSJNBa0002J24 genomic sequence, complete sequence. | |||
GenBank | AP014959 | 0.0 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015631804.1 | 0.0 | transcription factor BHLH089-like isoform X1 | ||||
Refseq | XP_015631806.1 | 0.0 | transcription factor PIF3 isoform X2 | ||||
Refseq | XP_025879771.1 | 0.0 | transcription factor BHLH089-like isoform X1 | ||||
TrEMBL | Q8W5G3 | 0.0 | Q8W5G3_ORYSJ; Helix-loop-helix DNA-binding domain containing protein, expressed | ||||
STRING | ORGLA03G0322200.1 | 0.0 | (Oryza glaberrima) | ||||
STRING | ORGLA10G0168100.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14445 | 21 | 23 | Representative plant | OGRP1048 | 14 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G14760.1 | 1e-34 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | LOC_Os03g55550.1 |