PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g55220.2
Common NameLOC4334181, Os03g0759700, OsJ_12666, OSJNBb0048A17.16, OSNPB_030759700
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 318aa    MW: 33168.3 Da    PI: 7.8588
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g55220.2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.15e-06152198354
                       HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       ++ n+r r RR+r+ +++  L++l+ +      +K + a++L +A  YI+ L
  LOC_Os03g55220.2 152 TTTNKRPRVRRERLGERIIALQQLVSPF-----GKSDTASVLHEALGYIRFL 198
                       678************************8.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.754149198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-12151210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-7154207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-5155204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.83E-5155203No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009066anatomyanther
PO:0001004developmental stageanther development stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MVKEEEIITE AAGARGYMEM LGLGEEAADY LMCLSPSSYL SSPAASTTTA VASPTCASYL  60
APHPYHHLLS FSGQDQYHGD DVFGLQYYGG DQVIPAVVPQ KSSPTTECSS SVSSMSSSPT  120
ATAISSSKSP AFKKKGSRGC DQRKATAPAA ATTTNKRPRV RRERLGERII ALQQLVSPFG  180
KSDTASVLHE ALGYIRFLHD QVQVLSSPYL QRLPPSARVP EQERGTPAAE EQPPALRPSD  240
LRSRGLCLVP ISCTEHVAGA GAGTGHGNGA DLWSVAAGMA KATATVTAAV ERSKEAAAAA  300
AATAALLRAD RPGQQLA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.518470.0callus| flower| panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329828560.0
Expression AtlasQ94HA7-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g55220.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g55220
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0728330.0AK072833.1 Oryza sativa Japonica Group cDNA clone:J023136C11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628341.10.0transcription factor bHLH113
RefseqXP_015628342.10.0transcription factor bHLH113
TrEMBLA0A0E0P1L30.0A0A0E0P1L3_ORYRU; Uncharacterized protein
TrEMBLA2XM710.0A2XM71_ORYSI; Uncharacterized protein
TrEMBLQ94HA70.0Q94HA7_ORYSJ; Helix-loop-helix DNA-binding domain containing protein, expressed
STRINGORUFI03G36360.10.0(Oryza rufipogon)
STRINGOS03T0759700-010.0(Oryza sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19500.12e-25bHLH family protein