PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LOC_Os03g53960.2 | ||||||||
Common Name | ADA2, LOC4334126, Os03g0750800, OSJNBa0047E24.21 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 568aa MW: 63551.7 Da PI: 7.5522 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 39.6 | 1.2e-12 | 111 | 151 | 4 | 45 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 W ++E+ ll+++++++G g+W+ +a+++g ++t qc++++ LOC_Os03g53960.2 111 WNADEEILLLEGIEMYGLGNWAEVAEHVG-TKTKAQCIDHYT 151 *****************************.**********96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF025024 | 2.2E-186 | 37 | 563 | IPR016827 | Transcriptional adaptor 2 |
SMART | SM00291 | 1.6E-10 | 47 | 92 | IPR000433 | Zinc finger, ZZ-type |
Pfam | PF00569 | 3.2E-9 | 49 | 90 | IPR000433 | Zinc finger, ZZ-type |
CDD | cd02335 | 3.05E-26 | 51 | 99 | No hit | No description |
PROSITE profile | PS50135 | 10.824 | 51 | 94 | IPR000433 | Zinc finger, ZZ-type |
SuperFamily | SSF57850 | 2.71E-14 | 51 | 114 | No hit | No description |
PROSITE pattern | PS01357 | 0 | 53 | 80 | IPR000433 | Zinc finger, ZZ-type |
SuperFamily | SSF46689 | 8.97E-13 | 104 | 157 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 22.533 | 106 | 158 | IPR017884 | SANT domain |
SMART | SM00717 | 2.4E-11 | 107 | 156 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.7E-12 | 110 | 151 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.51E-12 | 111 | 152 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.8E-9 | 111 | 153 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.36E-22 | 464 | 556 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006357 | Biological Process | regulation of transcription from RNA polymerase II promoter | ||||
GO:0009631 | Biological Process | cold acclimation | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0016573 | Biological Process | histone acetylation | ||||
GO:0042127 | Biological Process | regulation of cell proliferation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003713 | Molecular Function | transcription coactivator activity | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Plant Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PO Term | PO Category | PO Description | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0007042 | developmental stage | whole plant fruit formation stage | ||||
PO:0007633 | developmental stage | endosperm development stage |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 568 aa Download sequence Send to blast |
MGRSRGVPNS GDDETNHRSK RRRVASSGDA PDSLSAACGG AGEGGGKKAL YHCNYCNKDI 60 SGKIRIKCSK CPDFDLCVEC FSVGAEVTPH RSNHPYRVMD NLSFPLICPD WNADEEILLL 120 EGIEMYGLGN WAEVAEHVGT KTKAQCIDHY TTAYMNSPCY PLPDMSHVNG KNRKELLAMA 180 KVQGESKKVL PGDLTPKDES PFSPPRVKVE DALGEGLAGR SPSHIAGGAN KKASNVGQFK 240 DGANVAKVED GHVDRSIGVK KPRYSADEGP SLTELSGYNS KRHEFDPEYD NDAEQALAEM 300 EFKETDSETD RELKLRVLRI YLSRLDERKR RKEFILERNL LFPNPLEKDL TNEDKEVYHR 360 YKVFMRFLSK EEHEALVRSV LEERKIRRRI QELQECRSAG CRTLAEAKIH IEQKRKKEHE 420 VNAQKAKESG QLLSNTKVVH KTNRPMKIES DGNLDQKKGG ASLDSTGRDS PKTTGHAGTK 480 HWDDWDIVGF PGAELLSTSE KNLCCQNRLL PNHYLKMQEV LMQEIFKGSV AKKEDAHVLF 540 KVDPAKVDNV YDMVTKKLGT NEEAPTV* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6cw2_C | 3e-38 | 51 | 166 | 5 | 120 | Transcriptional adapter 2 |
6cw3_E | 4e-38 | 51 | 166 | 5 | 120 | Transcriptional adapter 2 |
6cw3_G | 4e-38 | 51 | 166 | 5 | 120 | Transcriptional adapter 2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 19 | 23 | KRRRV |
2 | 327 | 332 | RKRRKE |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Os.59266 | 0.0 | callus| flower| leaf| panicle| root| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | E-value | ||||
GEO | 32982620 | 0.0 | ||||
Expression Atlas | Q75LL6 | - |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Required for the function of some acidic activation domains, which activate transcription from a distant site. The exact mechanism of action is not yet known. ADA2 and GCN5 function to acetylate nucleosomes, opening up the promoter region (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LOC_Os03g53960.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
RiceGE | Os03g53960 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK072597 | 0.0 | AK072597.1 Oryza sativa Japonica Group cDNA clone:J023128E10, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015631988.1 | 0.0 | transcriptional adapter ADA2 | ||||
Swissprot | Q75LL6 | 0.0 | TADA2_ORYSJ; Transcriptional adapter ADA2 | ||||
TrEMBL | A0A0E0P1D3 | 0.0 | A0A0E0P1D3_ORYRU; Transcriptional adapter | ||||
TrEMBL | B8AJW8 | 0.0 | B8AJW8_ORYSI; Transcriptional adapter | ||||
TrEMBL | B9FBU4 | 0.0 | B9FBU4_ORYSJ; Transcriptional adapter | ||||
STRING | OS03T0750800-01 | 0.0 | (Oryza sativa) |
Link Out ? help Back to Top | |
---|---|
Phytozome | LOC_Os03g53960.2 |
Entrez Gene | 4334126 |
Publications ? help Back to Top | |||
---|---|---|---|
|