PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g53050.1
Common NameLOC4334062, OJ1365_D05.15, Os03g0741400, OSNPB_030741400
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 388aa    MW: 42051.9 Da    PI: 10.5119
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g53050.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.12.7e-31321379259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                        D+++WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp+++++tYeg+Hnh+
  LOC_Os03g53050.1 321 ADEFSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDDPSMLIVTYEGDHNHN 379
                       69*************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105334.3E-16274318IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.806.9E-34308380IPR003657WRKY domain
PROSITE profilePS5081129.757315381IPR003657WRKY domain
SuperFamilySSF1182908.5E-27318379IPR003657WRKY domain
SMARTSM007742.5E-38320380IPR003657WRKY domain
PfamPF031068.5E-27322378IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009049anatomyinflorescence
PO:0001083developmental stageinflorescence development stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MEGMEEANRE AVQSCHRVLT LLSSPHSQLV PNKDLAAATG EAVAKFCSVA SRLNNGNGLQ  60
GHARVRKIKK PLPIFDSNLF LESPALAVAM AAKTPNSSPI TSLQLFPRYH QMEGSSSKDP  120
VRIPAQFPKR LLLDNPAVDS DGPSRGPPLQ LIQPVSVAPP AGTPHPALPS AHLHFIQQHQ  180
SYQRFQLMQQ MKMQSEMIKR SGLGEQGGSN GGGKGVNLKF DSSNCTASSS RSFLSSLSME  240
GSIASLDGSR SSRPFQLVSG SQTSSTPELG LMQRRRCTGR EDGSGRCTTG SRCHCAKKRK  300
LRIRRSIKVP AISNKVADIP ADEFSWRKYG QKPIKGSPHP RGYYKCSSVR GCPARKHVER  360
CVDDPSMLIV TYEGDHNHNR VLAAQPA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-193183791272WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.591300.0callus| flower| leaf| panicle| root| seed
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO379914610.0
Expression AtlasQ75KW2-
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: More abundant in apices and young leaf primordia than in fully expanded leaf tissues. {ECO:0000269|PubMed:16243907}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g53050.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g53050
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1218380.0AK121838.1 Oryza sativa Japonica Group cDNA clone:J033100L17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632919.10.0protein WRKY1
SwissprotQ32SG40.0WRKY1_MAIZE; Protein WRKY1
TrEMBLQ75KW20.0Q75KW2_ORYSJ; Os03g0741400 protein
STRINGOS03T0741400-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102503242
Representative plantOGRP18171541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28650.13e-61WRKY DNA-binding protein 74