PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g53020.1
Common NameBHLH148, LOC4334060, OJ1365_D05.18, Os03g0741100
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 300aa    MW: 32907.6 Da    PI: 5.2973
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g53020.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.35.6e-08132176554
                       HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       h +rEr+RR+++ ++++ L  ++ ++      K +K +i++ A  YI++L
  LOC_Os03g53020.1 132 HMMRERQRREKLSQSYADLYAMVSSR-----SKGDKNSIVQSAAIYIHEL 176
                       889**********************8.....6999999*********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.738127176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.18E-12127197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.00E-7131177No hitNo description
PfamPF000101.4E-5132176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.4E-9132195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-4133182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009038anatomypalea
PO:0001048developmental stagepalea development stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MQMESYYGAF HADEAAFFFP HHVPASPELP FGLIASPEPE PEPEQAAAEA RQSAFQEYGG  60
AVHAGAPAAA GAVTTGGTNI HRRVMDVLGR MGGGGGGGEK GEGEEMEEEE EVPQRRRRGQ  120
GADVESSRGF RHMMRERQRR EKLSQSYADL YAMVSSRSKG DKNSIVQSAA IYIHELKVAR  180
DQLQRRNEEL KAQIMGHDEQ QPCVTVQFEV DEPSSSIDSM IAALRRLKGM SVKARGIRSS  240
MSGNRLWTEM NVETTIAACE VEKAVEEALK EVERNQPDSD APFPGSKGWT QTSHVQNVF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.594190.0callus| leaf| root| seed
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329817570.0
Expression AtlasQ75KV9-
Functional Description ? help Back to Top
Source Description
UniProtMay act on an initial response of jasmonate-regulated gene expression toward drought tolerance as part of a BHLH148-TIFY11D/JAZ12-COI1A complex. {ECO:0000269|PubMed:21332845}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g53020.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), methyl jasmonate (MeJA), drought, cold, salt and wounding. {ECO:0000269|PubMed:21332845}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g53020
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0717340.0AK071734.1 Oryza sativa Japonica Group cDNA clone:J023108N23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631231.10.0transcription factor BHLH148
SwissprotQ75KV90.0BH148_ORYSJ; Transcription factor BHLH148
TrEMBLA0A0E0P1320.0A0A0E0P132_ORYRU; Uncharacterized protein
STRINGOS03T0741100-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59403450
Representative plantOGRP97631112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43650.18e-20bHLH family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]
  3. Carretero-Paulet L, et al.
    Genome-wide classification and evolutionary analysis of the bHLH family of transcription factors in Arabidopsis, poplar, rice, moss, and algae.
    Plant Physiol., 2010. 153(3): p. 1398-412
    [PMID:20472752]
  4. Seo JS, et al.
    OsbHLH148, a basic helix-loop-helix protein, interacts with OsJAZ proteins in a jasmonate signaling pathway leading to drought tolerance in rice.
    Plant J., 2011. 65(6): p. 907-21
    [PMID:21332845]