PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os03g52450.2 | ||||||||
Common Name | GATA19, LOC4334019, Os03g0734900, OsJ_12477, OSJNBa0027J18.9, TIFY1B | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | GATA | ||||||||
Protein Properties | Length: 224aa MW: 24358.7 Da PI: 8.6577 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 48.1 | 1.5e-15 | 118 | 154 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C+nCg ++ Tp +Rrgp g+++LCnaCGl+++ kg+ LOC_Os03g52450.2 118 CQNCGISSrlTPAMRRGPAGPRSLCNACGLMWANKGT 154 **********************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51017 | 13.493 | 47 | 89 | IPR010402 | CCT domain |
Pfam | PF06203 | 4.1E-16 | 47 | 87 | IPR010402 | CCT domain |
SMART | SM00401 | 6.0E-10 | 112 | 166 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.52E-10 | 115 | 166 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 5.8E-14 | 116 | 156 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF00320 | 2.8E-13 | 118 | 154 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 118 | 145 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 5.40E-13 | 118 | 164 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding | ||||
GO:0001085 | Molecular Function | RNA polymerase II transcription factor binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0003682 | Molecular Function | chromatin binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0025281 | anatomy | pollen | ||||
PO:0001015 | developmental stage | K second mitotic division stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MTDCYVSVIQ VQAVLLVLGG SDMPPGLVSM AVPTTFDEKS TTVAARRVAS LMRFREKRKE 60 RCFDKKIRYS VRKEVAQKMK RRKGQFAGRA DFGDGSCSSA PCGSTANGED DHIRETHCQN 120 CGISSRLTPA MRRGPAGPRS LCNACGLMWA NKGTLRSPLN APKMTVQHPA DLSKTGDTDD 180 SKANLCAEHN QTTMKTDTEM VPEQEQKADV LPPTKEEDSM ATS* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.13666 | 0.0 | flower| panicle| seed| vegetative meristem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 156764691 | 0.0 | ||||
Expression Atlas | Q0DNU1 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os03g52450.2 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os03g52450 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK288076 | 0.0 | AK288076.1 Oryza sativa Japonica Group cDNA, clone: J075163P08, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015632020.1 | 1e-167 | GATA transcription factor 19 isoform X2 | ||||
Swissprot | Q0DNU1 | 1e-159 | GAT19_ORYSJ; GATA transcription factor 19 | ||||
TrEMBL | A0A0E0GTG6 | 1e-157 | A0A0E0GTG6_ORYNI; Uncharacterized protein | ||||
STRING | OS03T0734900-00 | 1e-158 | (Oryza sativa) | ||||
STRING | ONIVA03G34920.1 | 1e-158 | (Oryza nivara) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51600.2 | 2e-44 | ZIM-LIKE 2 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os03g52450.2 |
Entrez Gene | 4334019 |
Publications ? help Back to Top | |||
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