PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g52450.1
Common NameGATA19, LOC4334019, Os03g0734900, OsJ_12477, OSJNBa0027J18.9, TIFY1B
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GATA
Protein Properties Length: 272aa    MW: 29027.7 Da    PI: 6.5108
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g52450.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA47.72.1e-15166202135
              GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                       C+nCg ++  Tp +Rrgp g+++LCnaCGl+++ kg+
  LOC_Os03g52450.1 166 CQNCGISSrlTPAMRRGPAGPRSLCNACGLMWANKGT 202
                       **********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009791.0E-93368IPR010399Tify domain
PROSITE profilePS5132015.5483368IPR010399Tify domain
PfamPF062007.5E-133567IPR010399Tify domain
PROSITE profilePS5101713.49395137IPR010402CCT domain
PfamPF062035.5E-1695135IPR010402CCT domain
SMARTSM004016.0E-10160214IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.107.9E-14164204IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577162.14E-10164214No hitNo description
PfamPF003203.8E-13166202IPR000679Zinc finger, GATA-type
CDDcd002022.21E-13166212No hitNo description
PROSITE patternPS003440166193IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0025281anatomypollen
PO:0001015developmental stageK second mitotic division stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MAAEPPADGR DPPADDGAAG DGAVESAAAE ALLSAASEQL TLVYQGEVYV FDPVPPQKVQ  60
AVLLVLGGSD MPPGLVSMAV PTTFDEKSTT VAARRVASLM RFREKRKERC FDKKIRYSVR  120
KEVAQKMKRR KGQFAGRADF GDGSCSSAPC GSTANGEDDH IRETHCQNCG ISSRLTPAMR  180
RGPAGPRSLC NACGLMWANK GTLRSPLNAP KMTVQHPADL SKTGDTDDSK ANLCAEHNQT  240
TMKTDTEMVP EQEQKADVLP PTKEEDSMAT S*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.136660.0flower| panicle| seed| vegetative meristem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1567646910.0
Expression AtlasQ0DNU1-
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g52450.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g52450
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2880760.0AK288076.1 Oryza sativa Japonica Group cDNA, clone: J075163P08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632019.10.0GATA transcription factor 19 isoform X1
SwissprotB8AR300.0GAT19_ORYSI; GATA transcription factor 19
SwissprotQ0DNU10.0GAT19_ORYSJ; GATA transcription factor 19
TrEMBLA0A0E0GTG60.0A0A0E0GTG6_ORYNI; Uncharacterized protein
STRINGOS03T0734900-000.0(Oryza sativa)
STRINGONIVA03G34920.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34603773
Representative plantOGRP8311661
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.21e-55ZIM-LIKE 2
Publications ? help Back to Top
  1. Reyes JC,Muro-Pastor MI,Florencio FJ
    The GATA family of transcription factors in Arabidopsis and rice.
    Plant Physiol., 2004. 134(4): p. 1718-32
    [PMID:15084732]
  2. Ye H,Du H,Tang N,Li X,Xiong L
    Identification and expression profiling analysis of TIFY family genes involved in stress and phytohormone responses in rice.
    Plant Mol. Biol., 2009. 71(3): p. 291-305
    [PMID:19618278]