PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os03g51710.2 | ||||||||
Common Name | HOS13, LOC4333975, Os03g0727200, OSH3, OSJNBa0013A09.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | TALE | ||||||||
Protein Properties | Length: 366aa MW: 40037.1 Da PI: 5.6562 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 16.1 | 1.9e-05 | 273 | 307 | 21 | 55 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 + ++ps+ e+ LA+++gL+++q+ + F N+R ++ LOC_Os03g51710.2 273 RWPNPSEMEKIALAESTGLEQKQINNCFINQRKRH 307 5689****************************885 PP | |||||||
2 | ELK | 33.1 | 1.2e-11 | 228 | 248 | 2 | 22 |
ELK 2 LKhqLlrKYsgyLgsLkqEFs 22 LK++LlrKYsgyLg+L++E+s LOC_Os03g51710.2 228 LKRHLLRKYSGYLGGLRKELS 248 9******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 1.5E-16 | 71 | 115 | IPR005540 | KNOX1 |
Pfam | PF03790 | 9.2E-16 | 73 | 111 | IPR005540 | KNOX1 |
SMART | SM01256 | 1.9E-24 | 125 | 176 | IPR005541 | KNOX2 |
Pfam | PF03791 | 4.0E-19 | 131 | 174 | IPR005541 | KNOX2 |
SMART | SM01188 | 2100 | 134 | 154 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 10.109 | 227 | 247 | IPR005539 | ELK domain |
SMART | SM01188 | 5.4E-6 | 227 | 248 | IPR005539 | ELK domain |
Pfam | PF03789 | 8.8E-8 | 228 | 248 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 9.102 | 247 | 310 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 9.41E-16 | 248 | 318 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 2.5E-7 | 249 | 314 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-23 | 252 | 313 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.02E-7 | 259 | 310 | No hit | No description |
Pfam | PF05920 | 3.1E-11 | 267 | 306 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009049 | anatomy | inflorescence | ||||
PO:0001083 | developmental stage | inflorescence development stage | ||||
PO:0007006 | developmental stage | IL.00 inflorescence just visible stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 366 aa Download sequence Send to blast |
MEELEGHRGE GRLPPPPPLL PFPKVSVQVY TVPSSSTAAS AAAAGGARQA VAPATRDGGD 60 GGGRAAGVLD DPVKARIVSH PRYHRLLAAF LDCHKVGCPA EAAEEIAAAA RVREARQRAA 120 AAASRMPPAP EDPELDQFME DYCKLLVECK EELSRPLQEA EEFLRTVESE LNSINSGPPL 180 TALISESKAG LDSSDDDEHE DGSGMEMMEA AEDEDLGIID PRSDDKALKR HLLRKYSGYL 240 GGLRKELSKK RKKGKLPKEA RQKLLTWWEL HYRWPNPSEM EKIALAESTG LEQKQINNCF 300 INQRKRHWKP TEEMEFAVME AYHHQSTDAA AAFYVDVDAR LVGATAAAPA SAVYTARPDH 360 GVWRA* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 242 | 251 | LRKELSKKRK |
2 | 248 | 252 | KKRKK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.1855 | 0.0 | panicle |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 5103722 | 0.0 | ||||
Expression Atlas | Q948L5 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Highly expressed in the early globular stage embryo before 2 days after pollination (DAP), as well as in the endosperm. At 3 DAP, expression is down-regulated in the central region and in the center of the ventral region of the embryo, where the shoot subsequently forms, but weakly expressed in other regions until 4 DAP, and then disappears after 4 DAP. During transition between the inflorescence and floral phases, expressed in the inflorescence meristems but not in the floral meristem. {ECO:0000269|PubMed:10095070, ECO:0000269|PubMed:10488233}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10488233}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os03g51710.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os03g51710 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB071663 | 0.0 | AB071663.1 Oryza sativa Japonica Group mRNA for transcription factor OSH3, complete cds, cultivar:Nipponbare. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015628822.1 | 0.0 | homeobox protein knotted-1-like 7 | ||||
Swissprot | Q948L5 | 0.0 | KNOS7_ORYSJ; Homeobox protein knotted-1-like 7 | ||||
TrEMBL | Q948L4 | 0.0 | Q948L4_ORYSI; Transcription factor OSH3 | ||||
STRING | OS03T0727200-00 | 0.0 | (Oryza sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G08150.1 | 2e-64 | KNOTTED-like from Arabidopsis thaliana |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os03g51710.2 |
Entrez Gene | 4333975 |
Publications ? help Back to Top | |||
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