PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os03g51580.1
Common NameLOC4333965, Os03g0725800, OSJNBa0013A09.16, OSJNBb0122C16.8, OSNPB_030725800
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 360aa    MW: 38178 Da    PI: 5.7583
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os03g51580.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.91.6e-12180227355
                       HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       + h  +Er+RR+++ ++f  L +++P +     kK++Ka++L  A++Y+k+Lq
  LOC_Os03g51580.1 180 QEHILAERKRREKLSQRFIALSKIVPGL-----KKMDKASVLGDAIKYVKQLQ 227
                       67999***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.025177226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.51E-18180245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-17180238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-10180227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.47E-13182231No hitNo description
SMARTSM003536.1E-15183232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009066anatomyanther
PO:0001004developmental stageanther development stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MATQWFSNMV MDEPSFFHQW QSDGLLEQYT EQQIAVAFGQ AGEADAAAAA AAMMVQQQQY  60
AAAAAAEHRP RKAAKVNTSW DSCITEQGSP ADSSSPTILS FGGHADAAAA AAFASAGQAQ  120
SAPYYGGASA AALKPKQELD AAAAPFSQAR PVKRSYDAMV AADVAKAPAA AASRPASQNQ  180
EHILAERKRR EKLSQRFIAL SKIVPGLKKM DKASVLGDAI KYVKQLQDQV KGLEEEARRR  240
PVEAAVLVKK SQLSADDDDG SSCDENFDGG EATAGLPEIE ARVSERTVLV KIHCENRKGA  300
LITALSEVET IGLTIMNTNV LPFTSSSLDI TIMATAGENF SLSVKDIVKK LNQAFKLSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-13182236963Transcription factor MYC2
5gnj_B2e-13182236963Transcription factor MYC2
5gnj_E2e-13182236963Transcription factor MYC2
5gnj_F2e-13182236963Transcription factor MYC2
5gnj_G2e-13182236963Transcription factor MYC2
5gnj_I2e-13182236963Transcription factor MYC2
5gnj_M2e-13182236963Transcription factor MYC2
5gnj_N2e-13182236963Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1185190ERKRRE
2186191RKRREK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.74410.0flower| leaf| panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO379901620.0
Expression AtlasQ75GI1-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os03g51580.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs03g51580
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1205390.0AK120539.1 Oryza sativa Japonica Group cDNA clone:J013129F07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627848.10.0transcription factor bHLH18
RefseqXP_015627849.10.0transcription factor bHLH18
TrEMBLQ75GI10.0Q75GI1_ORYSJ; Helix-loop-helix DNA-binding domain containing protein, expressed
STRINGOS03T0725800-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42133572
Representative plantOGRP6561573
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22750.22e-46bHLH family protein