PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os03g51330.1 | ||||||||
Common Name | LOC4333948, Os03g0723000, OSNPB_030723000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | GRAS | ||||||||
Protein Properties | Length: 579aa MW: 62477.5 Da PI: 5.9538 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 353 | 4.5e-108 | 209 | 578 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 + Ll+c +a ++ d la a La ++ a+ +gdp +Rla+yf+ AL++rla ++ + +++++++ s+e + +k++++++P+ kf+h LOC_Os03g51330.1 209 QSLLSCSRAAAT-DPGLAAAELASVRAAATDAGDPSERLAFYFADALSRRLAC---GTGAPPSAEPDARFASDELTLCYKTLNDACPYSKFAH 297 7899**998776.89999999*******************************8...5555555566666669999****************** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakr 185 ltaNqaIlea+ ++++Hi+Df+i qG+QW+aLlqaLa+Rpeg+p ++RiTgv sp g + +l +t+ rL++fA+ lgv+fef + + + LOC_Os03g51330.1 298 LTANQAILEATGAATKIHIVDFGIVQGIQWAALLQALATRPEGKPtRIRITGVPSPLLGpqPAASLAATNTRLRDFAKLLGVDFEFVP-LLRP 389 *****************************************88777*********998888999************************.599* PP GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278 +++l+ +++ v+p+Ea+aVn++lql++ll +s +l +vL+l kslsP vv++ e e+++n++ F++rf++al+yy +lf+sl++ + r+ LOC_Os03g51330.1 390 VHELNKSDFLVEPDEAVAVNFMLQLYHLLGDSDELVR---RVLRLAKSLSPAVVTLGEYEVSLNRAGFVDRFANALSYYRSLFESLDVAMTRD 479 *****************************88888877...***************************************************** PP GRAS 279 seerikvErellgreivnvva.cegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLv 368 s er+ vEr ++g++i+ +v ega+r+er+ ++W+ +e +GF+pvpls++a +qa+lll +++ + y++ e +++ l W++rpL+ LOC_Os03g51330.1 480 SPERVRVERWMFGERIQRAVGpEEGADRTERMAGSSEWQTLMEWCGFEPVPLSNYARSQADLLLWNYDsKYKYSLVELPPAFLsLAWEKRPLL 572 ********************8356889*****************************************7778999999999988********* PP GRAS 369 svSaWr 374 +vSaWr LOC_Os03g51330.1 573 TVSAWR 578 *****8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 57.782 | 181 | 556 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.5E-105 | 209 | 578 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009049 | anatomy | inflorescence | ||||
PO:0001083 | developmental stage | inflorescence development stage | ||||
PO:0007006 | developmental stage | IL.00 inflorescence just visible stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 579 aa Download sequence Send to blast |
MAYMCADSGN LMAIAQQVIQ QQQQQQQQQQ RHHHHHHLPP PPPPQSMAPH HHQQKHHHHH 60 QQMPAMPQAP PSSHGQIPGQ LAYGGGAAWP AGEHFFADAF GASAGDAVFS DLAAAADFDS 120 DGWMESLIGD APFQDSDLER LIFTTPPPPV PSPPPTHAAA TATATAATAA PRPEAAPALL 180 PQPAAATPVA CSSPSPSSAD ASCSAPILQS LLSCSRAAAT DPGLAAAELA SVRAAATDAG 240 DPSERLAFYF ADALSRRLAC GTGAPPSAEP DARFASDELT LCYKTLNDAC PYSKFAHLTA 300 NQAILEATGA ATKIHIVDFG IVQGIQWAAL LQALATRPEG KPTRIRITGV PSPLLGPQPA 360 ASLAATNTRL RDFAKLLGVD FEFVPLLRPV HELNKSDFLV EPDEAVAVNF MLQLYHLLGD 420 SDELVRRVLR LAKSLSPAVV TLGEYEVSLN RAGFVDRFAN ALSYYRSLFE SLDVAMTRDS 480 PERVRVERWM FGERIQRAVG PEEGADRTER MAGSSEWQTL MEWCGFEPVP LSNYARSQAD 540 LLLWNYDSKY KYSLVELPPA FLSLAWEKRP LLTVSAWR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 0.0 | 204 | 578 | 1 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.18082 | 0.0 | callus| panicle| root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32986812 | 0.0 | ||||
Expression Atlas | Q53K16 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (By similarity). Binds DNA in vitro (PubMed:27081181). {ECO:0000250|UniProtKB:A0A024B7I0, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:27081181}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os03g51330.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os03g51330 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC146936 | 0.0 | AC146936.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 3 clone B1154F06 map near C10769, complete sequence. | |||
GenBank | AK064022 | 0.0 | AK064022.1 Oryza sativa Japonica Group cDNA clone:001-125-A04, full insert sequence. | |||
GenBank | AK101603 | 0.0 | AK101603.1 Oryza sativa Japonica Group cDNA clone:J033051K20, full insert sequence. | |||
GenBank | AK102857 | 0.0 | AK102857.1 Oryza sativa Japonica Group cDNA clone:J033110P03, full insert sequence. | |||
GenBank | AP014959 | 0.0 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015628849.1 | 0.0 | SCARECROW-LIKE protein 7 | ||||
Swissprot | Q53K16 | 0.0 | SCL7_ORYSJ; SCARECROW-LIKE protein 7 | ||||
TrEMBL | A0A0D9YYY5 | 0.0 | A0A0D9YYY5_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0GT20 | 0.0 | A0A0E0GT20_ORYNI; Uncharacterized protein | ||||
TrEMBL | A2XLI9 | 0.0 | A2XLI9_ORYSI; Uncharacterized protein | ||||
STRING | OGLUM02G35110.1 | 0.0 | (Oryza glumipatula) | ||||
STRING | OS03T0723000-01 | 0.0 | (Oryza sativa) | ||||
STRING | ONIVA03G33890.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8569 | 37 | 48 | Representative plant | OGRP6799 | 15 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66770.1 | 1e-143 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os03g51330.1 |
Entrez Gene | 4333948 |
Publications ? help Back to Top | |||
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