PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LOC_Os03g50900.1

Organism

Oryza sativa subsp. japonica

Taxonomic ID

39947

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

FAR1

Protein Properties

Length: 760aa MW: 87901 Da PI: 7.9162

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LOC_Os03g50900.1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	95.1	8.1e-30	41	128	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 fY +YA++vGFsvr+sks++s+++++i++r+fvCskeg++++++++t k++r+ra r gC+a+++v++++ g+w+v+kl +eHnH++ LOC_Os03g50900.1 41 FYMAYASRVGFSVRISKSRRSRNDESIIMRRFVCSKEGFHHKKQTDTGKRKRKRAIIREGCHAMIEVSQKYYGRWVVIKLIKEHNHAV 128 9*************************************************************************************97 PP
2	FAR1	78	1.8e-24	162	249	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY +YA+++GF+vr++ s++s +++++++r+fvC++eg + e+++ ++++r+r + r gC+a++++ k++++kw+v+kl l H+Hela LOC_Os03g50900.1 162 FYYAYASRMGFDVRIRLSRRSPKDETFVMRRFVCTREGATPCEENE-NRRKRNRGVPREGCQAMFEIVKKDQDKWVVSKLFLAHTHELA 249 9**************************************99999.999***********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.7E-27	41	128	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	2.6E-21	162	249	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.4E-14	366	450	IPR018289	MULE transposase domain
Pfam	PF04434	1.2E-7	642	680	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	10.324	643	681	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	7.2E-6	656	683	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 760 aa Download sequence Send to blast
MAFDVNSEPV DMNNTSSKAN LENSEPFVGM EFESEEAAKV FYMAYASRVG FSVRISKSRR 60 SRNDESIIMR RFVCSKEGFH HKKQTDTGKR KRKRAIIREG CHAMIEVSQK YYGRWVVIKL 120 IKEHNHAVAA PSIVRYVAPE EYAQLEPFAG MEFPSYESAQ TFYYAYASRM GFDVRIRLSR 180 RSPKDETFVM RRFVCTREGA TPCEENENRR KRNRGVPREG CQAMFEIVKK DQDKWVVSKL 240 FLAHTHELAN VPNKVHYIQS NSEVVVLAKS SVLRENSIAP TLNSPLADLG RNFEKQATND 300 QEIREPRRNA FGLDDTQKLL GYFKRLNAEN PTFSYAFQVE KNDCLTHAFW ADAKARTSYY 360 YFGDAVTLET SFVENNDLLP LVMFSGVNHH LQREMFGCAL LTDFTEASYI WLFQNWIAAM 420 GSHHPTSLTT VYNEAIGSAI AKIFPQTHHL YFTADILKRS KDILADIYFR HVSFEREFYV 480 CINEPETIEM FELSWKKVLD KYDLHDNSWL QSLYRIRQKW VPVYFKGVFT ADLSASQRPE 540 SLRNIFEKYF NRRTALPVFI SLFEHLMAGW SEREAVEDLA TSFTRPVLRT PSNMMKQVSE 600 IYTTTVFNIL EEEFIGSLGY YISSLDNDGL IAVYSVTKED TEATCRVRYD TSGNIAKCSC 660 CKFESCGILC RHILRVFLAL DVRTIPDVYI LKRWTKEAKN GFVLDECLRY SELHRDALRY 720 AREGSTSGEV FTFAQQTLQV AFAEVVQMKQ ETFSQCTIR*

Sequence ? help Back to Top

Protein Sequence Length: 760 aa Download sequence Send to blast

MAFDVNSEPV DMNNTSSKAN LENSEPFVGM EFESEEAAKV FYMAYASRVG FSVRISKSRR  60
SRNDESIIMR RFVCSKEGFH HKKQTDTGKR KRKRAIIREG CHAMIEVSQK YYGRWVVIKL  120
IKEHNHAVAA PSIVRYVAPE EYAQLEPFAG MEFPSYESAQ TFYYAYASRM GFDVRIRLSR  180
RSPKDETFVM RRFVCTREGA TPCEENENRR KRNRGVPREG CQAMFEIVKK DQDKWVVSKL  240
FLAHTHELAN VPNKVHYIQS NSEVVVLAKS SVLRENSIAP TLNSPLADLG RNFEKQATND  300
QEIREPRRNA FGLDDTQKLL GYFKRLNAEN PTFSYAFQVE KNDCLTHAFW ADAKARTSYY  360
YFGDAVTLET SFVENNDLLP LVMFSGVNHH LQREMFGCAL LTDFTEASYI WLFQNWIAAM  420
GSHHPTSLTT VYNEAIGSAI AKIFPQTHHL YFTADILKRS KDILADIYFR HVSFEREFYV  480
CINEPETIEM FELSWKKVLD KYDLHDNSWL QSLYRIRQKW VPVYFKGVFT ADLSASQRPE  540
SLRNIFEKYF NRRTALPVFI SLFEHLMAGW SEREAVEDLA TSFTRPVLRT PSNMMKQVSE  600
IYTTTVFNIL EEEFIGSLGY YISSLDNDGL IAVYSVTKED TEATCRVRYD TSGNIAKCSC  660
CKFESCGILC RHILRVFLAL DVRTIPDVYI LKRWTKEAKN GFVLDECLRY SELHRDALRY  720
AREGSTSGEV FTFAQQTLQV AFAEVVQMKQ ETFSQCTIR*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.51810	0.0	callus\| flower\| stem

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	32973826	0.0
Expression Atlas	Q10DV6	-

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LOC_Os03g50900.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Phenotype -- Mutation ? help Back to Top
Source	ID
RiceGE	Os03g50900

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC091532	0.0	AC091532.14 Oryza sativa chromosome 3 BAC OSJNBa0078A17 genomic sequence, complete sequence.
GenBank	AP014959	0.0	AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBank	CP012611	0.0	CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015632988.1	0.0	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_015632989.1	0.0	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_015632990.1	0.0	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_015632991.1	0.0	protein FAR1-RELATED SEQUENCE 5
TrEMBL	Q10DV6	0.0	Q10DV6_ORYSJ; Transposon protein, putative, unclassified, expressed
STRING	OB03G39100.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967
Representative plant	OGRP30	12	351

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-131	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	LOC_Os03g50900.1